View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_8 (Length: 530)
Name: NF16511_low_8
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 34383624 - 34383120
Alignment:
| Q |
18 |
tgaagcacattcaagtttagaccataagtagcaacaagacccgccaagcctgaaaataagaggaaacaattaatcaacaaagatataaaacaagatctgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34383624 |
tgaagcacattcaagtttagaccataagtagcaacaagacccgccaagcctgaaaataagaggaaacaattaatcaacaaagatataaaacaagatctgt |
34383525 |
T |
|
| Q |
118 |
ggaatctgattctaatcttactaatttcttttgtgctttaacgaactgcctagggatatagtgaatgttgagagatataaaaaagtgaataccaaaatgc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34383524 |
ggaatctgattctaatcttactaatttcttttgtgctttaacgaactgcctagggatatagtgaatgttgagagatataaaaaagtgaataccaaaaagc |
34383425 |
T |
|
| Q |
218 |
tatttatctacaaaattatttccccttctggctgtggagtcgcaaaagttgtaaatttccttcctcctagtttcttaattactctaatggaaattgactc |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34383424 |
tatttatctacaaaattatttccccttctggttgtggagtcgcaaaagttgtaaatttccttcctcctagtttcttaattactctaatggaaattgactc |
34383325 |
T |
|
| Q |
318 |
tcacatacatgtatgaactttaaaaaactatcactgcttataggatgaacgcaggagaaaggaacttactgggattgatggaagaccttggcaaagtaac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34383324 |
tcacatacatgtatgaactttaaaaaactatcactgcttataggatgaacgcaggagaaaggaacttactgggattgatggcagaccttggcaaagtaac |
34383225 |
T |
|
| Q |
418 |
caagatgacgagaacaaaatagaataccaaattgaagagaaaattgattctgacagacaaccattccatggtggcatagttgtgaaaggctacccgagaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34383224 |
caagatgacgagaacaaaatagaataccaaattgaagagaaaattgattctgacggacaaccattccatggtggcatagttgtgaaaggctacccgagaa |
34383125 |
T |
|
| Q |
518 |
taatc |
522 |
Q |
| |
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||||| |
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| T |
34383124 |
taatc |
34383120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 31825971 - 31825900
Alignment:
| Q |
18 |
tgaagcacattcaagtttagaccataagtagcaacaagacccgccaagcctgaaaataagaggaaacaatta |
89 |
Q |
| |
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||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
31825971 |
tgaagcacattcaagttcaaaccataagtagatacaagacctgccaagcctgaaaataagaggaaacaatta |
31825900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 37582108 - 37582059
Alignment:
| Q |
317 |
ctcacatacatgtatgaactttaaaaaactatcactgcttataggatgaa |
366 |
Q |
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||||||||||||||| || ||| |||| |||||||||||||||||||||| |
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| T |
37582108 |
ctcacatacatgtataaattttgaaaatctatcactgcttataggatgaa |
37582059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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