View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_9 (Length: 529)
Name: NF16511_low_9
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 10465593 - 10465093
Alignment:
| Q |
18 |
attatacaggtcgtcagggaattgcaacattcaagaaatggtgttacggtgatcacggaagatggttgtgtttacgaagccaattatgtgattctgtccg |
117 |
Q |
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| T |
10465593 |
attatacaggtcgtcagggaattgcaacattcaagaaatggtgttacggtgatcacggaagatggttgtgtttacgaagccaattatgtgattctgtccg |
10465494 |
T |
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| Q |
118 |
ttagcattggcgttctccaaagtgacctacttgccttcaatccacccttaccagtacgttttctcaatacatattcttctcctttatttactctaaggag |
217 |
Q |
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| T |
10465493 |
ttagcattggcgttctccaaagtgacctacttgccttcaatccacccttaccagtacgttttctcaatacatattcttctcctttatttactctaaggag |
10465394 |
T |
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| Q |
218 |
ccccgtgtaatcaagcaagctagccgtagaatattgtatgatgtgggatgcatttattggtcccggatatgtggacacctcgtgcttctcacgctgatat |
317 |
Q |
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| T |
10465393 |
ccccgtgtaatcaagcaagctagccgtagaatattgtatgatgtgggatgcatttattggtcccggatatgtggacacctcgtgcttctcacgctgatat |
10465294 |
T |
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| Q |
318 |
tttttaagctcattcattaatttgagaacttgccaccaacatggtgaaaatggaatctctaggtgttgttctttctgtctatacatacgggtcactacag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10465293 |
tttttaagctcattcattaatttgagaacttgccaccaacatggtgaaaatggaatctctaggtgtggttctttctgtctatacatacgggtcactacag |
10465194 |
T |
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| Q |
418 |
caggaatttcccttttgtggcccccaagtcttaaatattattggttgggaatgtaaagaaatgtagggatagctaggttttgtattaaatttgaggagta |
517 |
Q |
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| T |
10465193 |
caggaatttcccttttgtggcccccaagtcttaaatattattggttgggaatgtaaagaaatgtagggatagctaggttttgtattaaatttgaggagta |
10465094 |
T |
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| Q |
518 |
t |
518 |
Q |
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| T |
10465093 |
t |
10465093 |
T |
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