View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16512_high_11 (Length: 295)
Name: NF16512_high_11
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 25089820 - 25089558
Alignment:
| Q |
17 |
catcagttgttaccggagtgaggagcagtttggcgaaaacttcatcggtgtgaggatccgccagaagatcaatagatgagatgatacatagaacggatgg |
116 |
Q |
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| T |
25089820 |
catcagttgttaccggagtaaggagcagtttcgcaaagacttcatcggtgtgaagatttgccagaagatcaacagatgagatgatgcagagaacggatgg |
25089721 |
T |
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| Q |
117 |
aaggcgaagacatagattggagctgtgtttcaatgttaggggatggactagcatgttccaagtgaccttgtgggaagtagtagacttttgagccaatctt |
216 |
Q |
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| T |
25089720 |
agggcgaagacatagaa-ggagctctgtttcaatgttaggggatgaacaagcatgttccaagtggccttctgagaagtagtagacttttgagccaatctt |
25089622 |
T |
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| Q |
217 |
cggaatcttgacagcaggtccggcgcatatttgccatattttggatttcatacggcgtggctga |
280 |
Q |
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| T |
25089621 |
cggaatcttgacagcaggtccagcgcgtatttgccatattttggagtccacacggcgtggctga |
25089558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 25147790 - 25147528
Alignment:
| Q |
17 |
catcagttgttaccggagtgaggagcagtttggcgaaaacttcatcggtgtgaggatccgccagaagatcaatagatgagatgatacatagaacggatgg |
116 |
Q |
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| T |
25147790 |
catcagttgttaccggagtaaggagcagtttcgcaaagacttcatcggtgtgaagatttgccagaagatcaacagatgagatgatgcagagaacggatgg |
25147691 |
T |
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| Q |
117 |
aaggcgaagacatagattggagctgtgtttcaatgttaggggatggactagcatgttccaagtgaccttgtgggaagtagtagacttttgagccaatctt |
216 |
Q |
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| T |
25147690 |
agggcgaagacatagaa-ggagctctgtttcaatgttaggggatgaacaagcatgttccaagtggccttctgagaagtagtagacttttgagccaatctt |
25147592 |
T |
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| Q |
217 |
cggaatcttgacagcaggtccggcgcatatttgccatattttggatttcatacggcgtggctga |
280 |
Q |
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| T |
25147591 |
cggaatcttgacagcaggtccagcgcgtatttgccatattttggagtccacacggcgtggctga |
25147528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 25728373 - 25728466
Alignment:
| Q |
167 |
gcatgttccaagtgaccttgtgggaagtagtagacttttgagccaatcttcggaatcttgacagcaggtccggcgcatatttgccatattttgg |
260 |
Q |
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| T |
25728373 |
gcatgttccagatgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgacgtcggggccggcgcatatctgccatattttgg |
25728466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 25224875 - 25224782
Alignment:
| Q |
167 |
gcatgttccaagtgaccttgtgggaagtagtagacttttgagccaatcttcggaatcttgacagcaggtccggcgcatatttgccatattttgg |
260 |
Q |
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| T |
25224875 |
gcatgttccagatgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgacgtcggggccaacgcatatctgccatattttgg |
25224782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 25289031 - 25288938
Alignment:
| Q |
167 |
gcatgttccaagtgaccttgtgggaagtagtagacttttgagccaatcttcggaatcttgacagcaggtccggcgcatatttgccatattttgg |
260 |
Q |
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| T |
25289031 |
gcatgttccagatgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgacgtcggggccaacgcatatctgccatattttgg |
25288938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 26099248 - 26099296
Alignment:
| Q |
26 |
ttaccggagtgaggagcagtttggcgaaaacttcatcggtgtgaggatc |
74 |
Q |
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| T |
26099248 |
ttacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatc |
26099296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 25443691 - 25443754
Alignment:
| Q |
25 |
gttaccggagtgaggagcagtttggcgaaaacttcatcggtgtgaggatccgccagaagatcaa |
88 |
Q |
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| T |
25443691 |
gttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaa |
25443754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 25618133 - 25618083
Alignment:
| Q |
24 |
tgttaccggagtgaggagcagtttggcgaaaacttcatcggtgtgaggatc |
74 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
25618133 |
tgttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatc |
25618083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 25617992 - 25617936
Alignment:
| Q |
166 |
agcatgttccaagtgaccttgtgggaagtagtagacttttgagccaatcttcggaat |
222 |
Q |
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| T |
25617992 |
agcatgttctaagtgaccttttggaaagtagtagactttagagtgaagcttcggaat |
25617936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 560839 - 560760
Alignment:
| Q |
25 |
gttaccggagtgaggagcagtttggcgaaaacttcatcggtgtgaggatccgccagaagatcaatagatgagatgataca |
104 |
Q |
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| T |
560839 |
gttacaggagtgagcagcagtttagcgaagacctcatcagtgtgaggatcggcgaggagatcaacagcggagatgataca |
560760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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