View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_high_16 (Length: 260)

Name: NF16512_high_16
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_high_16
NF16512_high_16
[»] chr1 (9 HSPs)
chr1 (22-254)||(10605069-10605308)
chr1 (52-100)||(30762018-30762066)
chr1 (35-97)||(10785093-10785155)
chr1 (35-100)||(4431062-4431127)
chr1 (35-100)||(49820543-49820608)
chr1 (38-97)||(27905821-27905880)
chr1 (50-97)||(34159045-34159092)
chr1 (35-100)||(7451890-7451955)
chr1 (59-100)||(32882774-32882815)
[»] chr4 (5 HSPs)
chr4 (35-97)||(42719543-42719605)
chr4 (38-99)||(19814847-19814908)
chr4 (34-104)||(21983500-21983569)
chr4 (35-104)||(28967262-28967330)
chr4 (43-100)||(52009220-52009277)
[»] chr6 (4 HSPs)
chr6 (43-97)||(3880244-3880298)
chr6 (35-100)||(13423749-13423814)
chr6 (52-100)||(4043346-4043394)
chr6 (35-103)||(16180483-16180550)
[»] chr8 (5 HSPs)
chr8 (35-96)||(12197708-12197769)
chr8 (35-96)||(12442136-12442197)
chr8 (57-100)||(2613176-2613219)
chr8 (40-104)||(8843739-8843802)
chr8 (44-100)||(17656365-17656421)
[»] chr7 (5 HSPs)
chr7 (39-104)||(3478739-3478804)
chr7 (35-96)||(33719352-33719413)
chr7 (35-97)||(6726051-6726113)
chr7 (35-104)||(42532884-42532953)
chr7 (35-104)||(47456699-47456767)
[»] chr5 (3 HSPs)
chr5 (35-100)||(8297857-8297922)
chr5 (44-104)||(25992397-25992457)
chr5 (35-100)||(23426687-23426752)
[»] chr3 (4 HSPs)
chr3 (187-259)||(32604646-32604718)
chr3 (49-97)||(46358014-46358062)
chr3 (35-97)||(32010174-32010236)
chr3 (35-97)||(50518721-50518783)
[»] chr2 (5 HSPs)
chr2 (35-104)||(15361111-15361179)
chr2 (43-97)||(4975140-4975194)
chr2 (43-97)||(4993048-4993102)
chr2 (35-75)||(13337637-13337677)
chr2 (35-99)||(40470777-40470840)
[»] scaffold0063 (1 HSPs)
scaffold0063 (35-79)||(58515-58559)
[»] scaffold0002 (1 HSPs)
scaffold0002 (60-100)||(426557-426597)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 10605069 - 10605308
Alignment:
Q  22 gtgatgaggtagatattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattcnnnnnnnnnn------- 114  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||                     
T  10605069 gtgatgaggtatatattctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgctgattcaaaaaaaaaaagtatag 10605168  T
Q  115 tgatgaggtagataagaataataaggacctttcaaggacaagggcaaaaggggccatgaagatagtagcaataacatgacggtacacagagagtacccaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605169 tgatgaggtagataagaataataaggacctttcaaggacaagggcaaaaggggccatgaagatagtagcaataacatgacggtacacagagagtacccaa 10605268  T
Q  215 tgactcatgccatgcttgaatgaaaccatagtgatgatgt 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10605269 tgactcatgccatgcttgaatgaaaccatagtgatgatgt 10605308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 30762066 - 30762018
Alignment:
Q  52 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  30762066 gtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctg 30762018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 10785155 - 10785093
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||| |||| ||  |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  10785155 tattctcagttttacccgtctctattcgtcttgagcagggatctggttgttaaatgaaatttg 10785093  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 4431062 - 4431127
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    |||||||  |||||| |||||||||||||||||||||  ||| || ||||| ||||||||||||||    
T  4431062 tattctcaatttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctg 4431127  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 49820543 - 49820608
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||||| ||||| | |||||||  ||||||||||  |||| ||||||||||||||||||||||    
T  49820543 tattctctgattcaccgatctctatctgtcttgagcagagatcagattgttaaataaaatttgctg 49820608  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 27905821 - 27905880
Alignment:
Q  38 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||| ||||| |||||| ||||    
T  27905821 tctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttg 27905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 34159045 - 34159092
Alignment:
Q  50 tggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| ||||    
T  34159045 tggtctctatttgtcttgagcagggatctgattgtttaataaattttg 34159092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 7451955 - 7451890
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||| ||||||| ||||||| |||||||||||||  |||||  ||||| ||||| ||||||||    
T  7451955 tattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctg 7451890  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 32882774 - 32882815
Alignment:
Q  59 ttcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  32882774 ttcgtcttgagcagggatgtgattgtttaataaaatttgctg 32882815  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 42719543 - 42719605
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  42719543 tattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttg 42719605  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 19814908 - 19814847
Alignment:
Q  38 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 99  Q
    ||||||||| |  ||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  19814908 tctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgct 19814847  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 21983569 - 21983500
Alignment:
Q  34 atattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    ||||| ||| |||||  ||||||| ||||||||||||| |||||||||| || ||||||||||||||||||    
T  21983569 atattttctatttcatcggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctgattc 21983500  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 28967262 - 28967330
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    |||| |||||||||| | ||||| |||||||||||||   ||||| || |||||||||||||||||||||    
T  28967262 tattatctgtttcaccgatctctgttcgtcttgagcagaaatctggtt-ttaaataaaatttgctgattc 28967330  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 52009220 - 52009277
Alignment:
Q  43 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||| | ||||||||||||||| ||| ||||||| | ||| ||||||||||||||    
T  52009220 gtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctg 52009277  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 3880298 - 3880244
Alignment:
Q  43 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  3880298 gtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 13423749 - 13423814
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||| ||||||  ||||||| ||||||||||| | ||| || || ||||||||||||||||||    
T  13423749 tattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgctg 13423814  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 4043394 - 4043346
Alignment:
Q  52 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    |||| |||||||||||||||  ||| ||||| |||||||||||||||||    
T  4043394 gtctttattcgtcttgagcagagatttgatttttaaataaaatttgctg 4043346  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 16180550 - 16180483
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgatt 103  Q
    |||| |||||||||| | ||| | |||||||||||||  ||||||||| || |||||||||||||||||    
T  16180550 tattatctgtttcaccgatctttgttcgtcttgagcagagatctgatt-tttaataaaatttgctgatt 16180483  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 12197769 - 12197708
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 96  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12197769 tattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12197708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 12442197 - 12442136
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 96  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12442197 tattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 2613219 - 2613176
Alignment:
Q  57 tattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  2613219 tattcgtcttgagtagggatctgattgttaaataaaatttgctg 2613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 8843802 - 8843739
Alignment:
Q  40 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    |||||||||| ||||||| ||||||||||| | |||| ||||| || ||||||||||||||||||    
T  8843802 tctgtttcaccggtctctgttcgtcttgagaagggatttgatt-tttaataaaatttgctgattc 8843739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 17656421 - 17656365
Alignment:
Q  44 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    |||||| ||||||||||  || |||||| ||| ||||||||| ||||||||||||||    
T  17656421 tttcaccggtctctattgctcatgagcagggacctgattgtttaataaaatttgctg 17656365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 3478739 - 3478804
Alignment:
Q  39 ctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    |||| |||||| ||||||| || ||||||| || ||||||| ||||||||||||||||||||||||    
T  3478739 ctctctttcaccggtctctgtttgtcttgatcagggatctggttgttaaataaaatttgctgattc 3478804  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 33719352 - 33719413
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 96  Q
    ||||||| ||||||| | ||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  33719352 tattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 6726113 - 6726051
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||| ||||||| | ||||| |||||||||||||  |||||| ||||| |||||||||||    
T  6726113 tattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 42532953 - 42532884
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    ||||||| ||| ||| ||||||| ||||||||||||| |||| || ||||  |||||||||| |||||||    
T  42532953 tattctcagttccaccggtctctgttcgtcttgagcagggatttggttgtctaataaaatttactgattc 42532884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 47456767 - 47456699
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    |||| |||||||||| ||||||| |||||||||||||  |||||| || || ||||||||||| ||||||    
T  47456767 tattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttgattc 47456699  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 8297857 - 8297922
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    ||||||| ||||||| ||||||| ||||||||||| |  |||||||||||| ||||||||||||||    
T  8297857 tattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctg 8297922  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 25992397 - 25992457
Alignment:
Q  44 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    |||||| ||||||| |||||||||||||  |||||| ||||| ||||| ||||||||||||    
T  25992397 tttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttgctgattc 25992457  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 23426687 - 23426752
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    |||||||||  |||| ||||||| ||| |||||||||   |||||||| |||||||||||||||||    
T  23426687 tattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaatttgctg 23426752  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 32604646 - 32604718
Alignment:
Q  187 aacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgtccatc 259  Q
    ||||||||||||||| ||||| | |||||| ||||| ||||| ||||| ||||||||||| ||||||| ||||    
T  32604646 aacatgacggtacacggagagaatccaatggctcataccatgtttgaaagaaaccatagtaatgatgtacatc 32604718  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 46358062 - 46358014
Alignment:
Q  49 ctggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  46358062 ctggtctctgttcgtcttgagcagggatctggttgttaaataaaatttg 46358014  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 32010174 - 32010236
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    |||||||||  |||| | ||||| ||||||||||| | ||||||| |||||||||||||||||    
T  32010174 tattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttg 32010236  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 50518783 - 50518721
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    ||||||| |||||||  |||||| ||||||||||||| |||||  |||||| |||||||||||    
T  50518783 tattctcagtttcaccagtctctgttcgtcttgagcagggatcaaattgtttaataaaatttg 50518721  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 15361111 - 15361179
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 104  Q
    |||| ||||||||||  |||||||||||||||||||| |||| ||||| || ||||||||||| ||||||    
T  15361111 tattatctgtttcaccagtctctattcgtcttgagcagggatttgatt-tttaataaaatttgttgattc 15361179  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 4975140 - 4975194
Alignment:
Q  43 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4975140 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4975194  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 4993048 - 4993102
Alignment:
Q  43 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 97  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4993048 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4993102  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 13337637 - 13337677
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatgga 75  Q
    ||||||||||||||| ||||||| ||||||||||| |||||    
T  13337637 tattctctgtttcaccggtctctgttcgtcttgagtatgga 13337677  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 40470777 - 40470840
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 99  Q
    |||||||||||  |||| ||||| ||||||||||||| | |||||||| || |||||||||||||    
T  40470777 tattctctgttaaactgatctctgttcgtcttgagcaagaatctgatt-tttaataaaatttgct 40470840  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 58515 - 58559
Alignment:
Q  35 tattctctgtttcactggtctctattcgtcttgagcatggatctg 79  Q
    |||| |||||||||| ||||||| ||||||||||||| |||||||    
T  58515 tattatctgtttcaccggtctcttttcgtcttgagcagggatctg 58559  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 426597 - 426557
Alignment:
Q  60 tcgtcttgagcatggatctgattgttaaataaaatttgctg 100  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  426597 tcgtcttgagtagggatctgatttttaaataaaatttgctg 426557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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