View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16512_high_7 (Length: 375)
Name: NF16512_high_7
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 4265293 - 4265637
Alignment:
| Q |
19 |
accaaatcatcaattaagcctcggaaaaacaagaataaaaaacaactctgtcttaccatattcttcaattttttcaacagccaaatttctaagaaatgtc |
118 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4265293 |
accaaatcattaattaagcctccgaaaaacaagaataaaaaacaactctgtcttaccatattcttcaattttttcaacaaccaaatttctaagaaatgtc |
4265392 |
T |
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| Q |
119 |
taaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttctttgacatattatggttaaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4265393 |
taaaatcatagaaattttcaatgtatcaccatcttcacaggaagaacttcctttagaaacatcacttcctcttactttcttggacatattatggttaaga |
4265492 |
T |
|
| Q |
219 |
ttaccaccagttcaaagaattttcttctatgaatttccacaccaaacctcacttttctacaacacacttcttcgcaaactcaaaaaatcactttccattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
4265493 |
ttaccaccagttcaaagaattttcttctatgaatttccacaccaaacctcacttttctacaacacccttcttcccaaactcaaaaaatcactttccattg |
4265592 |
T |
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| Q |
319 |
cactttcttacttttatcctcttttgggtcatctcacttggccta |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265593 |
cactttcttacttttatcctcttttgggtcatctcacttggccta |
4265637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 119 - 362
Target Start/End: Original strand, 4259847 - 4260090
Alignment:
| Q |
119 |
taaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttctttgacatattatggttaaga |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4259847 |
taaaatcatagaaattttcaatgtagcaccatcttcacaagtagaactaccttcagaaacatcacttcctcttactttctttgacatactatggttaaga |
4259946 |
T |
|
| Q |
219 |
ttaccaccagttcaaagaattttcttctatgaatttccacaccaaacctcacttttctacaacacacttcttcgcaaactcaaaaaatcactttccattg |
318 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||| || ||||||| |||||||||||||||||||||||||| |
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| T |
4259947 |
ttaccacctgttcaaagaattttcttctatgagtttccacaccaaacctcatttttcttcaaaacccttcttcccaaactcaaaaaatcactttccattg |
4260046 |
T |
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| Q |
319 |
cactttcttacttttatcctcttttgggtcatctcacttggcct |
362 |
Q |
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| T |
4260047 |
cactttctcacttttatcctcttttgggtcatctcatttggcct |
4260090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 120 - 363
Target Start/End: Complemental strand, 4290329 - 4290086
Alignment:
| Q |
120 |
aaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttctttgacatattatggttaagat |
219 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4290329 |
aaaatcatagaaattttcaatgtagcaccatcatcacaagtagaactaccttcagaaacatcacttcctcttactttctttgacatattatggttaagat |
4290230 |
T |
|
| Q |
220 |
taccaccagttcaaagaattttcttctatgaatttccacaccaaacctcacttttctacaacacacttcttcgcaaactcaaaaaatcactttccattgc |
319 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||| |||| ||||| || | |
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| T |
4290229 |
taccacctgttcaaagaattttcttctatgaatttccacaccaaacctcacttttcttaaatacccttcttcccaaactcaaacaatctctttctcttac |
4290130 |
T |
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| Q |
320 |
actttcttacttttatcctcttttgggtcatctcacttggccta |
363 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
4290129 |
actttctcacttttatcctcttttgggtcatctcatttggccta |
4290086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 120 - 314
Target Start/End: Complemental strand, 4293697 - 4293503
Alignment:
| Q |
120 |
aaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttctttgacatattatggttaagat |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293697 |
aaaatcatagaaattttcaatgtagaaccatcatcacaagtagaactaccttcagaaacatcacttcctcttactttctttgacatattatggttaagat |
4293598 |
T |
|
| Q |
220 |
taccaccagttcaaagaattttcttctatgaatttccacaccaaacctcacttttctacaacacacttcttcgcaaactcaaaaaatcactttcc |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||| |||| |||||| |
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| T |
4293597 |
taccacctgttcaaagaattttcttctatgaatttccacaccaaacctcacttttcttcaatacccttcttcccaaactcaaacaatccctttcc |
4293503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 4303665 - 4303509
Alignment:
| Q |
42 |
gaaaaacaagaataaaaaacaactctgtcttaccatattcttcaattttttcaacagccaaatttctaagaaatgtctaaaatcatagaaattttcaatg |
141 |
Q |
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|
||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
4303665 |
gaaaaacaagaataaaatacaattctgtcttaccatcttcttcaattttttctacaaccaaatttctaaaaaatgtctaaaattatagaaattttcaatg |
4303566 |
T |
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| Q |
142 |
tatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttct |
198 |
Q |
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| T |
4303565 |
tatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttct |
4303509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 160 - 349
Target Start/End: Complemental strand, 4258573 - 4258385
Alignment:
| Q |
160 |
aagaacttccttcagaaacatcacttcctcttactttctttgacatattatggttaagattaccaccagttcaaagaattttcttctatgaatttccaca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4258573 |
aagaacttccttcagaaacatcacttcctcttactttctttgacatactatggttaagattaccacctgttcaaagaattttcttctatgaatttccaca |
4258474 |
T |
|
| Q |
260 |
ccaaacctcacttttctacaacacacttcttcgcaaactcaaaaaatcactttccattgcactttcttacttttatcctcttttgggtca |
349 |
Q |
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||||||||||||||||| ||| || ||||||| ||||||||| |||| ||||| || |||||||| ||| ||| | |||||||||||| |
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| T |
4258473 |
ccaaacctcacttttcttcaatacccttcttcccaaactcaatcaatccctttctcttacactttctcactctta-catcttttgggtca |
4258385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 192 - 323
Target Start/End: Complemental strand, 4300306 - 4300175
Alignment:
| Q |
192 |
actttctttgacatattatggttaagattaccaccagttcaaagaattttcttctatgaatttccacaccaaacctcacttttctacaacacacttcttc |
291 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
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| T |
4300306 |
actttctttgacatactatggttaagattaccaccaggtcaaaaaaatttcttctatgaatttccacaccaaaccacacttttcctcaacacccttcttc |
4300207 |
T |
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| Q |
292 |
gcaaactcaaaaaatcactttccattgcactt |
323 |
Q |
| |
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| T |
4300206 |
ccaaactcaaaaaatcactttccattgcactt |
4300175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 4298707 - 4298670
Alignment:
| Q |
326 |
ttacttttatcctcttttgggtcatctcacttggccta |
363 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4298707 |
ttacttttatcctcttttgggtcatctcacttggccta |
4298670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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