View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16512_low_1 (Length: 930)
Name: NF16512_low_1
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_1 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 861; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 861; E-Value: 0
Query Start/End: Original strand, 16 - 916
Target Start/End: Complemental strand, 28609046 - 28608146
Alignment:
| Q |
16 |
cagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacc |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28609046 |
cagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacc |
28608947 |
T |
|
| Q |
116 |
tccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28608946 |
tccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcaca |
28608847 |
T |
|
| Q |
216 |
ttcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgttttt |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608846 |
ttcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgttttt |
28608747 |
T |
|
| Q |
316 |
cgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttc |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608746 |
cgttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttc |
28608647 |
T |
|
| Q |
416 |
aaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgca |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28608646 |
aaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggcttctccatatgagaagcaacaagtgca |
28608547 |
T |
|
| Q |
516 |
ccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacag |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608546 |
ccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacag |
28608447 |
T |
|
| Q |
616 |
cctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttggg |
715 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608446 |
cttgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttggg |
28608347 |
T |
|
| Q |
716 |
cttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgac |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608346 |
cttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgac |
28608247 |
T |
|
| Q |
816 |
acattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaaaggtagtaaataataattttcaagtagatcaataccattcta |
915 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608246 |
acattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaaagggagtaaataataattttcaagtagatcaataccattcta |
28608147 |
T |
|
| Q |
916 |
t |
916 |
Q |
| |
|
| |
|
|
| T |
28608146 |
t |
28608146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 909
Target Start/End: Original strand, 437857 - 438750
Alignment:
| Q |
15 |
tcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggac |
114 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||| | ||||||||||| | |||||| ||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
437857 |
tcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggac |
437956 |
T |
|
| Q |
115 |
ctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcac |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | ||||||| |||||||||| ||| || ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
437957 |
caccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcac |
438056 |
T |
|
| Q |
215 |
attcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttt |
314 |
Q |
| |
|
||||||||| ||||||||| | ||| || ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
438057 |
attcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttt |
438156 |
T |
|
| Q |
315 |
tcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
414 |
Q |
| |
|
|| ||| | | |||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
438157 |
tcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgctt |
438256 |
T |
|
| Q |
415 |
caaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgc |
514 |
Q |
| |
|
|||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||| || |
|
|
| T |
438257 |
caaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggc |
438356 |
T |
|
| Q |
515 |
accatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctaca |
614 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
438357 |
accaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacg |
438456 |
T |
|
| Q |
615 |
gcctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgg |
714 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||| |||||||| ||| |
|
|
| T |
438457 |
gcctgacgagtattgtgaacacatgctagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttattattctcaaatctctttctgg |
438556 |
T |
|
| Q |
715 |
gcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatga |
814 |
Q |
| |
|
||||||||||| |||| |||| ||||| |||||||||||||||| || |||||| || ||||||||| |||| |||||||||| || ||||| || | |
|
|
| T |
438557 |
gcttgtatatggcattgatgacaggagccaccactatagtcattagaagaactgcagaggttaaaacagcatatgttggtggagaaagaatctacaaata |
438656 |
T |
|
| Q |
815 |
cacattataacaaatcaaaaattaaac-atttataattttgaagtgtgagttattaaaaaaggtagtaaataataattttcaagtagatcaatacc |
909 |
Q |
| |
|
||||| || ||||||||| ||| ||| ||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
438657 |
cacat--tagcaaatcaaagattgaactttttataattttgacgttagcgttattaaaaaagggagtaaataataattttcaagtagatcaatacc |
438750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 25 - 833
Target Start/End: Complemental strand, 13660408 - 13659600
Alignment:
| Q |
25 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||| |
|
|
| T |
13660408 |
caaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaa |
13660309 |
T |
|
| Q |
125 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttg |
224 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||||| ||| |
|
|
| T |
13660308 |
gatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggttt |
13660209 |
T |
|
| Q |
225 |
atatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaacta |
324 |
Q |
| |
|
||||||||| | |||||| ||||||||| | ||||||| | ||||| ||||| ||||||||||| | ||||| |||||| ||||||| ||| | |
|
|
| T |
13660208 |
atatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcag |
13660109 |
T |
|
| Q |
325 |
aattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttatt |
424 |
Q |
| |
|
| || |||||||| || |||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
13660108 |
agttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtatt |
13660009 |
T |
|
| Q |
425 |
atcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgt |
524 |
Q |
| |
|
|| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
13660008 |
attaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgt |
13659909 |
T |
|
| Q |
525 |
ccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgag |
624 |
Q |
| |
|
|| |||||||| |||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||| |||||| ||||||||| |||||| |||| |
|
|
| T |
13659908 |
cctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagattcaacgaggctgataacccctgtagcctggcgag |
13659809 |
T |
|
| Q |
625 |
tattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatat |
724 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| | ||||| ||||| |
|
|
| T |
13659808 |
cattatgaacacatgtaagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctctttctcggcttatatat |
13659709 |
T |
|
| Q |
725 |
gacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataa |
824 |
Q |
| |
|
|||||| || |||||| ||||||||||||||||||| ||||| | ||||||||| ||| ||| ||||||| || |||||| ||||||||||||||| |
|
|
| T |
13659708 |
gacattgattgtgggaggcaccactatagtcattaaaagtactgcagcagttaaaacagcatgggtgggtggagaaagaatctgcaatgacacattataa |
13659609 |
T |
|
| Q |
825 |
caaatcaaa |
833 |
Q |
| |
|
||||||||| |
|
|
| T |
13659608 |
caaatcaaa |
13659600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 74 - 873
Target Start/End: Complemental strand, 13652859 - 13652060
Alignment:
| Q |
74 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
173 |
Q |
| |
|
|||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||| |
|
|
| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
|
| Q |
174 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
273 |
Q |
| |
|
|||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
|
|
| T |
13652759 |
tcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13652660 |
T |
|
| Q |
274 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaa |
373 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
13652659 |
agtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
|
| Q |
374 |
cgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttcta |
473 |
Q |
| |
|
||| ||||| | |||||| || ||||||| | |||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || | |
|
|
| T |
13652559 |
ggttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctcca |
13652460 |
T |
|
| Q |
474 |
gattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtc |
573 |
Q |
| |
|
| ||| |||||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| || |
|
|
| T |
13652459 |
ggttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattc |
13652360 |
T |
|
| Q |
574 |
tagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagctt |
673 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||||||||| ||| || |||||||| |||||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
13652359 |
tagtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtattgtgaacacatgttagaatcctaagttctgcatcaagtctaagctt |
13652260 |
T |
|
| Q |
674 |
ttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgat |
773 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| ||||||| ||||| |||| || | | ||| ||||| ||||||||||||| || || | |
|
|
| T |
13652259 |
ttgtatagtctttagcttgttctgctcaaatctcttcctgggcttatatatcgcattaataacgagaggaaccacaatagtcattaaaaagaccgcagcc |
13652160 |
T |
|
| Q |
774 |
gttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaa |
873 |
Q |
| |
|
| ||||||| ||| || ||| || || |||||| ||||| | ||||||||||||||||| ||||| |||||||||||| ||||| |||||||| |
|
|
| T |
13652159 |
gataaaacagcatgagtgggttcagaaaaaatctgcaatgagaaattataacaaatcaaaatttaaattgatataattttgaatcttgagtaattaaaaa |
13652060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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