View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16512_low_10 (Length: 382)
Name: NF16512_low_10
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 129 - 336
Target Start/End: Original strand, 41986750 - 41986949
Alignment:
| Q |
129 |
tgctgcctacataatcctccagcagaatcataacaatgtggtcctatatatgtatatgattaaatggaagccgtgcatatgcatgtgtaacttgctgcca |
228 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41986750 |
tgctgcctacatagtcctcctgcggaatcataacaatgtggtcctat----gtatatgattaaatggaagccgtgcatatg----tgtaacttgctgcca |
41986841 |
T |
|
| Q |
229 |
atgttttctcaaggatatacactgttgagcatactgagttatacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacagtaaagatta |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41986842 |
atgttttctcaaggatatacactgttgagcatactgagttctacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacagtaaagatta |
41986941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41978490 - 41978616
Alignment:
| Q |
1 |
cctctttgaataggcctgcatgaatgataatctgaaatgtgaaactacaaaagttaatgattcaaaagagaaagtcatgcctattcttataactgaaata |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41978490 |
cctctttgaataggccggcatgaatgataatctgaaatgtgaaactacaaaagttaatgattcaaaagagaaagtcatgcctattcttataactgaaata |
41978589 |
T |
|
| Q |
101 |
atagcaagataaacatgatttcgacac |
127 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
41978590 |
atagcaagataaacatgacttcgacac |
41978616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 41986963 - 41987002
Alignment:
| Q |
333 |
ctatatatgaatgtttattgttatgagcaaagtttgctccc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41986963 |
ctatatatgaatgtttattgttatgagcaaa-tttgctccc |
41987002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 220 - 336
Target Start/End: Complemental strand, 1221604 - 1221488
Alignment:
| Q |
220 |
ttgctgccaatgttttctcaaggatatacactgttgagcatactgagttatacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1221604 |
ttgctgccaatgttttctcaaggatatacactgttgagcatactgagttatacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacag |
1221505 |
T |
|
| Q |
320 |
taaagattacagactat |
336 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1221504 |
taaagattacagactat |
1221488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 1221474 - 1221434
Alignment:
| Q |
333 |
ctatatatgaatgtttattgttatgagcaaagtttgctccc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1221474 |
ctatatatgaatgtttattgttatgagcaaagtttgctccc |
1221434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University