View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_low_12 (Length: 349)

Name: NF16512_low_12
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_low_12
NF16512_low_12
[»] scaffold0001 (1 HSPs)
scaffold0001 (213-333)||(12444-12564)
[»] chr6 (3 HSPs)
chr6 (205-335)||(11681970-11682100)
chr6 (247-336)||(18985578-18985667)
chr6 (288-335)||(11681842-11681889)
[»] chr5 (1 HSPs)
chr5 (247-336)||(23919850-23919939)
[»] chr8 (1 HSPs)
chr8 (247-336)||(30344110-30344199)
[»] chr7 (5 HSPs)
chr7 (205-286)||(25350428-25350509)
chr7 (205-286)||(25356122-25356203)
chr7 (274-335)||(33098112-33098173)
chr7 (288-335)||(25350264-25350311)
chr7 (288-335)||(25355958-25356005)
[»] chr4 (2 HSPs)
chr4 (205-292)||(1967812-1967899)
chr4 (290-335)||(1967593-1967638)


Alignment Details
Target: scaffold0001 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 213 - 333
Target Start/End: Original strand, 12444 - 12564
Alignment:
Q  213 tgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggt 312  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  12444 tgagcgtaacaaagctgaaaaatccttgggaggaggttggttacaatttgttagggacaattacctacaagagggcgacaagctgctattcgatttaggt 12543  T
Q  313 gttcctcctacagtgttgttt 333  Q
    |||||||||||| ||||||||    
T  12544 gttcctcctacaatgttgttt 12564  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 11682100 - 11681970
Alignment:
Q  205 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttg 304  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||    
T  11682100 attaccgctgagcgtaacaaggctgaaaaatccttgggaggaggttggttccagtttgttagggacaatcacctacaagaggacgacaagtagctatttg 11682001  T
Q  305 atttaggtgttcctcctacagtgttgtttgt 335  Q
    |||| |||||   ||||||| ||||||||||    
T  11682000 atttgggtgtctttcctacaatgttgtttgt 11681970  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 18985667 - 18985578
Alignment:
Q  247 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 336  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18985667 ggttggttccaatttgttagggacaatcacctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtg 18985578  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 11681889 - 11681842
Alignment:
Q  288 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 335  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11681889 cgacaagctgctatttgatttaggtgttcctcctacaatgttgtttgt 11681842  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 23919850 - 23919939
Alignment:
Q  247 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 336  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23919850 ggttggttccaatttgttagggacaatcacctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtg 23919939  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 30344110 - 30344199
Alignment:
Q  247 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  30344110 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgttattcgatttaggtgttactcctacagtgttgtttgtg 30344199  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 25350509 - 25350428
Alignment:
Q  205 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagg 286  Q
    ||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  25350509 attaccgctgagcgtaacaaggctgaaaaatccttgggaagaggttggttccagtttgttagggacaatcacctacaagagg 25350428  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 25356203 - 25356122
Alignment:
Q  205 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagg 286  Q
    ||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  25356203 attaccgctgagcgtaacaaggctgaaaaatccttgggaagaggttggttccagtttgttagggacaatcacctacaagagg 25356122  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 33098173 - 33098112
Alignment:
Q  274 cacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 335  Q
    |||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  33098173 cacctacaagagggtgacaagctgctattcgatttggatgttcctcctacaatgttgtttgt 33098112  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 25350311 - 25350264
Alignment:
Q  288 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 335  Q
    |||||||||||| || ||||| |||||||||||| |||||||||||||    
T  25350311 cgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgt 25350264  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 25356005 - 25355958
Alignment:
Q  288 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 335  Q
    |||||||||||| || ||||| |||||||||||| |||||||||||||    
T  25356005 cgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgt 25355958  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 1967899 - 1967812
Alignment:
Q  205 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgaca 292  Q
    ||||||| ||||||||||||   ||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  1967899 attaccgctgagcgtaacaagcttgaaaaatcattgggaggaggttggttccagtttgttagggacaaccacctacaagaggacgaca 1967812  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 1967638 - 1967593
Alignment:
Q  290 acaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 335  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1967638 acaagctgctatttgatttgggtgttcctcctacagtgttgtttgt 1967593  T

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