View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16512_low_13 (Length: 336)
Name: NF16512_low_13
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37221051 - 37220809
Alignment:
| Q |
1 |
cagataagaatttgggtgtcttgaatatgtaaattggtgttagcaattatgcatgctatatggaaaatggaaataggattttgagaaagacatctaaatc |
100 |
Q |
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| T |
37221051 |
cagataagaatttgggtgtcttgaatatgtaaactggtgttagcaattatgcatgctatatggaaaatggaaataggattttgagaaagacatctaaatc |
37220952 |
T |
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| Q |
101 |
ttccagttgtgagatatgaacattccaattataactcttaataatattaatattaaaattcatacaaaccaatcaactattannnnnnngtttaagtcaa |
200 |
Q |
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| T |
37220951 |
ttccagttgtgagatatgaacattccaattataactcttattaatattaatattaaaattcatacaaaccaatcaactattatttttttgtttaagtcaa |
37220852 |
T |
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| Q |
201 |
atgtaaggacctgtgagtgtaccatgataatatattgagattt |
243 |
Q |
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| T |
37220851 |
atgtaaggacctgtgagtgtaccatgataatatattgagattt |
37220809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 37220623 - 37220531
Alignment:
| Q |
229 |
aatatattgagattttgaacaaaataaataaataacccgtaggaggatttgacagagtcttagtttttgttgtgattgacatataatatatgt |
321 |
Q |
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| T |
37220623 |
aatatattgagattttgaacaaaataaataaataacccgtaggaggatttgacagagtcttagttattgttgtcattgaaatataatatatgt |
37220531 |
T |
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