View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_low_17 (Length: 290)

Name: NF16512_low_17
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_low_17
NF16512_low_17
[»] chr3 (10 HSPs)
chr3 (9-273)||(10594304-10594572)
chr3 (9-273)||(10513257-10513524)
chr3 (75-273)||(10510087-10510282)
chr3 (116-210)||(27183484-27183578)
chr3 (170-235)||(38747413-38747478)
chr3 (188-235)||(38749403-38749450)
chr3 (188-218)||(28701763-28701793)
chr3 (116-228)||(10921543-10921654)
chr3 (188-228)||(28719295-28719335)
chr3 (182-238)||(31287202-31287258)
[»] chr5 (2 HSPs)
chr5 (116-214)||(29481372-29481470)
chr5 (175-228)||(29469481-29469534)
[»] scaffold0888 (1 HSPs)
scaffold0888 (189-222)||(2302-2335)
[»] chr7 (2 HSPs)
chr7 (118-159)||(19199169-19199210)
chr7 (118-146)||(19198243-19198271)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 10594572 - 10594304
Alignment:
Q  9 gaagaaaatagtgtaactaaaatggaataatatatttgttatnnnnnnnn---ggcaatttaacaa-ctagcttactttcagcatttgttgctacgtcaa 104  Q
    |||||||| ||||||||||||||||||||||||||||||||            || ||||||| || || ||||||||||||||||||||||||||||||    
T  10594572 gaagaaaagagtgtaactaaaatggaataatatatttgttaaaaaaaaaaaaaggtaatttaaaaaactggcttactttcagcatttgttgctacgtcaa 10594473  T
Q  105 gaattagaaagagaaagataatcataacataaacaaacttaaaaacttcatccatgtttccctcatttacatgtaacaaatgattttatcactttataat 204  Q
    ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10594472 gaattagaaagggaaagataatcataacataaacaaatttgaaaacttcatccatgtttccctcatttacatgtaacaaatggttttatcactttataat 10594373  T
Q  205 ttataaagttcatcttctccttacttcaattaaattgcctttttcgtagaacaattaaatatcttttag 273  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10594372 ttataaagttcaatttctccttacttcaattaaattgtctttttcgtagaacaattaaatatcttttag 10594304  T

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Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 10513524 - 10513257
Alignment:
Q  9 gaagaaaatagtgtaactaaaatggaataatatatttgttatnnnnnnnn---ggcaatttaacaactagcttactttcagcatttgttgctacgtcaag 105  Q
    |||||||| ||||||||||||||||||||||||||||||||            || ||||||| |||| ||||||||||||||| |||||||||||||||    
T  10513524 gaagaaaagagtgtaactaaaatggaataatatatttgttacaaaaaaaaaaaggtaatttaaaaactggcttactttcagcatatgttgctacgtcaag 10513425  T
Q  106 aattagaaagagaaagataatcataacataaacaaacttaaaaacttcatccatgtttccctcatttacatgtaacaaatgattttatcactttataatt 205  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||    
T  10513424 aattagaaacagaaagataatcataacataaacaaacttgaaaacttcatccatgtttcccttatttacatataacaaatggttttataactttataatt 10513325  T
Q  206 tataaagttcatcttctccttacttcaattaaattgcctttttcgtagaacaattaaatatcttttag 273  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10513324 tataaagttcatcttctccttacttcaattaaattgtctttttcgtagaacaattaaatttcttttag 10513257  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 75 - 273
Target Start/End: Complemental strand, 10510282 - 10510087
Alignment:
Q  75 gcttactttcagcatttgttgctacgtcaagaattagaaagagaaagataatcataacataaacaaacttaaaaacttcatccatgtttccctcatttac 174  Q
    ||||||||| |||||||||||||||   || |||| || ||| |||||||||||||||||||||||||||  ||||||  ||||||||||||||||||||    
T  10510282 gcttactttgagcatttgttgctac---aataatttgagagaaaaagataatcataacataaacaaacttgtaaactttgtccatgtttccctcatttac 10510186  T
Q  175 atgtaacaaatgattttatcactttataatttataaagttcatcttctccttacttcaattaaattgcctttttcgtagaacaattaaatatcttttag 273  Q
    || ||||||||  |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  10510185 atttaacaaatagttttatcactttgtaatttataaagttcatattctccttactttaattaaattgtttttttcgtagaacaattaaatatcttttag 10510087  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 27183578 - 27183484
Alignment:
Q  116 agaaagataatcataacataaacaaacttaaaaacttcatccatgtttccctcatttacatgtaacaaatgattttatcactttataatttataa 210  Q
    ||||| ||||||||||||||||||||| || ||| |||| | || ||||| || |  |||||||||||||| ||||||||| |||||||||||||    
T  27183578 agaaaaataatcataacataaacaaacctacaaatttcagctatatttccttcctcaacatgtaacaaatggttttatcacattataatttataa 27183484  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 38747478 - 38747413
Alignment:
Q  170 tttacatgtaacaaatgattttatcactttataatttataaagttcatcttctccttacttcaatt 235  Q
    ||||||||||| || |  ||||||||||||||||||||||||||| ||| |||| |||| ||||||    
T  38747478 tttacatgtaataagttgttttatcactttataatttataaagttaatcatctctttacatcaatt 38747413  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 38749450 - 38749403
Alignment:
Q  188 ttttatcactttataatttataaagttcatcttctccttacttcaatt 235  Q
    ||||||||||||||||||||||||||| ||| |||| |||| ||||||    
T  38749450 ttttatcactttataatttataaagttaatcatctctttacatcaatt 38749403  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 28701763 - 28701793
Alignment:
Q  188 ttttatcactttataatttataaagttcatc 218  Q
    |||||||||||||||||||||||||||||||    
T  28701763 ttttatcactttataatttataaagttcatc 28701793  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 10921543 - 10921654
Alignment:
Q  116 agaaagataatcataacataaacaaacttaaaaacttcatccatgtttccctcatttacatgtaacaaatgattttatcactttataatttataaagttc 215  Q
    |||| ||||||||||||||||| |||||| | || || |  ||| ||| |||| ||| | ||||||||||| |||||||| || | ||||||||||| ||    
T  10921543 agaatgataatcataacataaataaacttgacaattttagtcatattttcctccttttcttgtaacaaatgtttttatca-ttgaaaatttataaagctc 10921641  T
Q  216 atcttctccttac 228  Q
    ||| || ||||||    
T  10921642 atcctccccttac 10921654  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 28719295 - 28719335
Alignment:
Q  188 ttttatcactttataatttataaagttcatcttctccttac 228  Q
    ||||||||||||||||||||||||| ||||| ||| |||||    
T  28719295 ttttatcactttataatttataaagctcatcctcttcttac 28719335  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 31287258 - 31287202
Alignment:
Q  182 aaatgattttatcactttataatttataaagttcatcttctccttacttcaattaaa 238  Q
    |||| |||||||| ||||||||||||||||| | ||  ||||||||| |||||||||    
T  31287258 aaattattttatcgctttataatttataaagataattctctccttacatcaattaaa 31287202  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 29481470 - 29481372
Alignment:
Q  116 agaaagataatcataacataaacaaacttaaaaacttcatccatgtttccctcatttacatgtaacaaatgattttatcactttataatttataaagtt 214  Q
    ||||| ||||||| ||||| ||||||||| | || | || |||||| ||||   ||| |||||||||||||||||||||| ||||||||||||| ||||    
T  29481470 agaaatataatcaaaacatgaacaaacttgataattccagccatgtatcccctctttgcatgtaacaaatgattttatcattttataatttatagagtt 29481372  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 29469534 - 29469481
Alignment:
Q  175 atgtaacaaatgattttatcactttataatttataaagttcatcttctccttac 228  Q
    ||||||||||||||||||||| ||||||||||||| ||||  ||||||||||||    
T  29469534 atgtaacaaatgattttatcattttataatttatagagttggtcttctccttac 29469481  T

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Target: scaffold0888 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 2335 - 2302
Alignment:
Q  189 tttatcactttataatttataaagttcatcttct 222  Q
    |||||||||||||||||||||||| |||||||||    
T  2335 tttatcactttataatttataaagctcatcttct 2302  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 19199210 - 19199169
Alignment:
Q  118 aaagataatcataacataaacaaacttaaaaacttcatccat 159  Q
    ||||||||||||||||||||||||||||| || |||| ||||    
T  19199210 aaagataatcataacataaacaaacttaacaatttcaaccat 19199169  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 19198271 - 19198243
Alignment:
Q  118 aaagataatcataacataaacaaacttaa 146  Q
    |||||||||||||||||||||||||||||    
T  19198271 aaagataatcataacataaacaaacttaa 19198243  T

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