View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_low_18 (Length: 281)

Name: NF16512_low_18
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_low_18
NF16512_low_18
[»] chr4 (3 HSPs)
chr4 (14-186)||(11016766-11016937)
chr4 (209-265)||(11016933-11016989)
chr4 (36-70)||(12068027-12068061)
[»] chr7 (2 HSPs)
chr7 (96-177)||(19112588-19112669)
chr7 (109-162)||(47609149-47609202)
[»] chr3 (4 HSPs)
chr3 (105-185)||(36903613-36903693)
chr3 (96-177)||(19155025-19155106)
chr3 (105-159)||(20909234-20909287)
chr3 (34-68)||(26786131-26786165)
[»] chr5 (1 HSPs)
chr5 (105-193)||(13876757-13876845)
[»] chr2 (2 HSPs)
chr2 (96-168)||(33765026-33765098)
chr2 (36-65)||(15953967-15953996)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 11016766 - 11016937
Alignment:
Q  14 agatgagatcatcaggtgttctaagtcaacaccatcagaccaatccaaatggattttttaaaagattatgtgagtgtttggatcaacttgaaaattatga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11016766 agatgagatcatcaggtgttctaagtcaacaccatcagaccaatccaaatagattttttaaaagattatgtgagtgtt-ggatcaacttgaaaattatga 11016864  T
Q  114 agctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgcaataccaaat 186  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11016865 agctacaaatattagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgtcgcaataccaaat 11016937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 11016933 - 11016989
Alignment:
Q  209 caaattcgactatcgtcaattggtttctagttgcttttcttttatgttatttttatt 265  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11016933 caaattcgactattgtcaattggtttctagttgcttttcttttatgttatttttatt 11016989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 12068061 - 12068027
Alignment:
Q  36 aagtcaacaccatcagaccaatccaaatggatttt 70  Q
    |||||||||| ||||||||||||||||||||||||    
T  12068061 aagtcaacacgatcagaccaatccaaatggatttt 12068027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 19112588 - 19112669
Alignment:
Q  96 tcaacttgaaaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgca 177  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  19112588 tcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacgtgattttccttgatgtgccgca 19112669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 47609149 - 47609202
Alignment:
Q  109 tatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgatttt 162  Q
    ||||||||||||| || |||||||||||||||||||| |||| |||||||||||    
T  47609149 tatgaagctacaaatacaagcttttgctttgatgtgaatttttaacgtgatttt 47609202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 36903693 - 36903613
Alignment:
Q  105 aaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgcaataccaaa 185  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||| | ||| |||||||||    
T  36903693 aaattatgaagctacaaatataagcttttgctttgatgtgattttctaacgtgattttgtttgatgtaccgtaataccaaa 36903613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 19155106 - 19155025
Alignment:
Q  96 tcaacttgaaaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgca 177  Q
    ||||| || ||| |||||||||| |||||||||||||||||||||||||| |||| ||||| ||||| ||||| ||| ||||    
T  19155106 tcaacgtggaaactatgaagctataattataagcttttgctttgatgtgaatttttaacgtaatttttcttgaaatgtcgca 19155025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 20909234 - 20909287
Alignment:
Q  105 aaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgat 159  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||    
T  20909234 aaattatga-gctacaaatataagcttttcctttgatgtgattttttaacgtgat 20909287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 26786131 - 26786165
Alignment:
Q  34 ctaagtcaacaccatcagaccaatccaaatggatt 68  Q
    ||||||||| |||||||||||||||||||||||||    
T  26786131 ctaagtcaataccatcagaccaatccaaatggatt 26786165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 13876845 - 13876757
Alignment:
Q  105 aaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgcaataccaaataggccat 193  Q
    ||||||||||| ||||| |||||||||||||||| || |||||||| |||||||||||| ||||| | || ||||| |||| |||||||    
T  13876845 aaattatgaagttacaaatataagcttttgcttttatatgattttttaacgtgattttgtttgatgtaccacaatatcaaacaggccat 13876757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 33765098 - 33765026
Alignment:
Q  96 tcaacttgaaaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttga 168  Q
    ||||| |||||| ||||||||||||| | | ||||||||||||||||||| |||| || || ||||| |||||    
T  33765098 tcaacgtgaaaactatgaagctacaaatctgagcttttgctttgatgtgaatttttaaagtaattttacttga 33765026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 15953996 - 15953967
Alignment:
Q  36 aagtcaacaccatcagaccaatccaaatgg 65  Q
    ||||||||||||||||||||||||||||||    
T  15953996 aagtcaacaccatcagaccaatccaaatgg 15953967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University