View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_low_20 (Length: 263)

Name: NF16512_low_20
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_low_20
NF16512_low_20
[»] chr5 (12 HSPs)
chr5 (84-198)||(41977917-41978031)
chr5 (30-89)||(41978356-41978415)
chr5 (34-90)||(27803082-27803138)
chr5 (203-243)||(41976926-41976966)
chr5 (40-83)||(16585346-16585389)
chr5 (40-90)||(3719104-3719154)
chr5 (31-90)||(8483857-8483916)
chr5 (47-90)||(39055535-39055578)
chr5 (41-90)||(4597435-4597485)
chr5 (39-84)||(5324503-5324548)
chr5 (42-87)||(16585110-16585155)
chr5 (41-97)||(20497231-20497287)
[»] chr2 (4 HSPs)
chr2 (34-90)||(9163976-9164032)
chr2 (42-86)||(9151165-9151209)
chr2 (53-90)||(12942424-12942461)
chr2 (42-90)||(17257084-17257132)
[»] chr1 (8 HSPs)
chr1 (42-90)||(11229081-11229129)
chr1 (41-89)||(33763692-33763740)
chr1 (55-91)||(34987196-34987232)
chr1 (55-89)||(34993688-34993722)
chr1 (48-90)||(38941155-38941197)
chr1 (40-89)||(10323871-10323920)
chr1 (39-90)||(31686685-31686736)
chr1 (55-88)||(25101905-25101938)
[»] chr3 (5 HSPs)
chr3 (38-90)||(39789535-39789587)
chr3 (41-90)||(39963061-39963110)
chr3 (40-88)||(28525590-28525638)
chr3 (41-90)||(37772620-37772669)
chr3 (46-90)||(6720496-6720540)
[»] chr7 (5 HSPs)
chr7 (42-90)||(48996777-48996825)
chr7 (40-90)||(30187458-30187509)
chr7 (43-90)||(48411256-48411303)
chr7 (42-82)||(30187703-30187743)
chr7 (30-82)||(39682018-39682069)
[»] chr8 (1 HSPs)
chr8 (40-90)||(40641175-40641225)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 41978031 - 41977917
Alignment:
Q  84 tgtgttatgttttaaattcatgttcatgtatttgtaggagtttagtttcttcaccatattctcttgtgcatgatacaatatacgagtcaccaactagaat 183  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41978031 tgtgttatgttttaaattcatgttcatgtattagtaggagtttagtttcttcaccatattctcttgtgcatgatacaatatacgagtcaccaactagaat 41977932  T
Q  184 cacttaggtaattgg 198  Q
    |||||||||||||||    
T  41977931 cacttaggtaattgg 41977917  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 41978415 - 41978356
Alignment:
Q  30 tcttagggttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41978415 tcttagggttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtt 41978356  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 27803138 - 27803082
Alignment:
Q  34 agggttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  27803138 agggtttgtttactttgtaaaaatattttctattttcatttcctaaaacttgtgtta 27803082  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 41976966 - 41976926
Alignment:
Q  203 gcttctggatgcagcatccacgtaaagccataaattctcta 243  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41976966 gcttctggatgcagcatccacgtaaagccataaattctcta 41976926  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 16585389 - 16585346
Alignment:
Q  40 cgtttactttgttaaaacattttctattttcatttcctaaaatt 83  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  16585389 cgtttactttgtgaaaacattttttattttcatttcctaaaatt 16585346  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 3719104 - 3719154
Alignment:
Q  40 cgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||||||||| ||| ||| |||| |||||||||||||||||||||||||    
T  3719104 cgtttactttgtgaaatcatgttctgttttcatttcctaaaatttgtgtta 3719154  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 8483857 - 8483916
Alignment:
Q  31 cttagggttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||  |||||||| || ||||||||||||||||| |||| || ||||||||||||    
T  8483857 cttagggtctgtttacttcgtgaaaacattttctatttttattttcttaaatttgtgtta 8483916  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 39055535 - 39055578
Alignment:
Q  47 tttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||    
T  39055535 tttgtgaaagcattttctattttcatttcttaaaatttgtgtta 39055578  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 4597435 - 4597485
Alignment:
Q  41 gtttactttgttaaaa-cattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||||| |||| |||||||||||||| ||| |||||||||||||||    
T  4597435 gtttactttgtgaaaaacattttctattttctttttctaaaatttgtgtta 4597485  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 5324503 - 5324548
Alignment:
Q  39 tcgtttactttgttaaaacattttctattttcatttcctaaaattt 84  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||||    
T  5324503 tcgtttactttgggaaaacattttctcatttcatttcctaaaattt 5324548  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 16585110 - 16585155
Alignment:
Q  42 tttactttgttaaaacattttctattttcatttcctaaaatttgtg 87  Q
    |||||||||| ||| |||| |||||||||||||||||||| |||||    
T  16585110 tttactttgtgaaatcattctctattttcatttcctaaaacttgtg 16585155  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 20497231 - 20497287
Alignment:
Q  41 gtttactttgttaaaacattttctattttcatttcctaaaatttgtgttatgtttta 97  Q
    ||||||||||| |||| ||||| |||||| ||||| ||||| |||||||| ||||||    
T  20497231 gtttactttgtgaaaatattttttattttgatttcttaaaagttgtgttaagtttta 20497287  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 9163976 - 9164032
Alignment:
Q  34 agggttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  9163976 agggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgtta 9164032  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 9151165 - 9151209
Alignment:
Q  42 tttactttgttaaaacattttctattttcatttcctaaaatttgt 86  Q
    |||||||||| |||||||||||| || ||||||||||||||||||    
T  9151165 tttactttgtgaaaacattttctgttatcatttcctaaaatttgt 9151209  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 12942424 - 12942461
Alignment:
Q  53 aaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  12942424 aaaacattttctattttcatttattaaaatttgtgtta 12942461  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 17257132 - 17257084
Alignment:
Q  42 tttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||| ||||| | ||||| |||||||||||||| |||||||||||||||    
T  17257132 tttaatttgtaagaacatcttctattttcattttctaaaatttgtgtta 17257084  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 11229081 - 11229129
Alignment:
Q  42 tttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11229081 tttactttgtgaaaacattttctattttcatttcctaaaatttgtgtta 11229129  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 33763740 - 33763692
Alignment:
Q  41 gtttactttgttaaaacattttctattttcatttcctaaaatttgtgtt 89  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  33763740 gtttactttgtgaaaacattttctatttttatttcttaaaatttgtgtt 33763692  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 34987232 - 34987196
Alignment:
Q  55 aacattttctattttcatttcctaaaatttgtgttat 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  34987232 aacattttctattttcatttcctaaaatttgtgttat 34987196  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 34993722 - 34993688
Alignment:
Q  55 aacattttctattttcatttcctaaaatttgtgtt 89  Q
    |||||||||||||||||||||||||||||||||||    
T  34993722 aacattttctattttcatttcctaaaatttgtgtt 34993688  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 38941155 - 38941197
Alignment:
Q  48 ttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  38941155 ttgtgaaaacattttctattttcatttcctaaaatatgtgtta 38941197  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 10323920 - 10323871
Alignment:
Q  40 cgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtt 89  Q
    |||||||||||| |||| ||| ||||||||||||||||||| ||||||||    
T  10323920 cgtttactttgtgaaaatattgtctattttcatttcctaaagtttgtgtt 10323871  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 31686685 - 31686736
Alignment:
Q  39 tcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||||||| |||||||||||||||||  | ||| |||||||||||||    
T  31686685 tcgtttactttgtgaaaacattttctatttttttctcccaaaatttgtgtta 31686736  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 25101905 - 25101938
Alignment:
Q  55 aacattttctattttcatttcctaaaatttgtgt 88  Q
    ||||||||||||||||||||| ||||||||||||    
T  25101905 aacattttctattttcatttcttaaaatttgtgt 25101938  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 39789587 - 39789535
Alignment:
Q  38 ttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  39789587 ttcgtttactttgtgaaaatattttctattttcattgcctaaaatttgtgtta 39789535  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 39963061 - 39963110
Alignment:
Q  41 gtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  39963061 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgtta 39963110  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 28525638 - 28525590
Alignment:
Q  40 cgtttactttgttaaaacattttctattttcatttcctaaaatttgtgt 88  Q
    |||||||||||| |||| |||||||| ||||||||| ||||||||||||    
T  28525638 cgtttactttgtaaaaatattttctagtttcatttcttaaaatttgtgt 28525590  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 37772620 - 37772669
Alignment:
Q  41 gtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||||| |  ||||||||| |||||||||||| ||||||||||||    
T  37772620 gtttactttgtgattacattttctgttttcatttcctgaaatttgtgtta 37772669  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 6720540 - 6720496
Alignment:
Q  46 ctttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||| |||||||||| ||||||||| | |||||||||||||||    
T  6720540 ctttgtaaaaacattttatattttcatattctaaaatttgtgtta 6720496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 48996777 - 48996825
Alignment:
Q  42 tttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  48996777 tttactttatgaaaacattttctattttcatttcataaaatttgtgtta 48996825  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 30187458 - 30187509
Alignment:
Q  40 cgtttactttgttaaaacatttt-ctattttcatttcctaaaatttgtgtta 90  Q
    |||||||||||| |||||||||| |||||||||||| || ||||||||||||    
T  30187458 cgtttactttgtgaaaacatttttctattttcattttctgaaatttgtgtta 30187509  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 48411256 - 48411303
Alignment:
Q  43 ttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    ||||||||| ||||||||||||||||||||||  ||||||||| ||||    
T  48411256 ttactttgtgaaaacattttctattttcattttttaaaatttgagtta 48411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 30187743 - 30187703
Alignment:
Q  42 tttactttgttaaaacattttctattttcatttcctaaaat 82  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  30187743 tttactttatgaaaacattttctattttcctttcctaaaat 30187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 39682069 - 39682018
Alignment:
Q  30 tcttagggttcgtttactttgttaaaacattttctattttcatttcctaaaat 82  Q
    ||||||| |||||||||||||| |||||||||| | ||||||||| |||||||    
T  39682069 tcttaggcttcgtttactttgtgaaaacatttt-ttttttcattttctaaaat 39682018  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 40641225 - 40641175
Alignment:
Q  40 cgtttactttgttaaaacattttctattttcatttcctaaaatttgtgtta 90  Q
    |||||| ||||  |||||||||||||||||||||| |||||||||||||||    
T  40641225 cgtttattttgcgaaaacattttctattttcattttctaaaatttgtgtta 40641175  T

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