View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16512_low_24 (Length: 216)
Name: NF16512_low_24
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 47848576 - 47848754
Alignment:
| Q |
19 |
agacatgactaattaaaaattccggaaacattgattagcaaataattgaaacacactcttaattttagaggattagaagcacactttactgtattttgca |
118 |
Q |
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| T |
47848576 |
agacatgactaattaaaaattcccgaaacattgattagcaaataattgaaacacactctta-ttttagaggattagaagcacactttattgtattttgca |
47848674 |
T |
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| Q |
119 |
tcatgcacgcgttagttttacatatttaaaaatttactattccaataatatggtaaaaacatatatatatgcatggtgtaag |
200 |
Q |
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| T |
47848675 |
tcatgcacgcattagttttacatatttagaaatttactattccaataatatggtaaaaac--atatatatgcatggtgtaag |
47848754 |
T |
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