View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16512_low_4 (Length: 679)
Name: NF16512_low_4
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 66 - 663
Target Start/End: Complemental strand, 19166879 - 19166263
Alignment:
| Q |
66 |
gtatcaaaccccgcatcctccacacgttgctgtattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19166879 |
gtatcaaaccccgcatcctccacacgttg---tattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
19166783 |
T |
|
| Q |
166 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaattcg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19166782 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaaatcg |
19166683 |
T |
|
| Q |
266 |
acggatttaata---------------------gtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataactgtg |
344 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19166682 |
acggatttaataaccttcccgtcgtcagcaatagtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataaccgtg |
19166583 |
T |
|
| Q |
345 |
tctgctgcccatcatacccc-atccgaacctccttctcagctccactgtcaccgttatccctcaccacgcctttcctgaacctcacactttttctccctc |
443 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19166582 |
tctgctgcccatcatacccccatcagaacctccttctcagccccactatcaccgttatccctcaccacgcctttcctgaacctcgcactttttctccctc |
19166483 |
T |
|
| Q |
444 |
cccgcttcttccccttacaaccgtcgcagctccctcacgctttctcacattcttttctccctcaccagtaccgctctccacctccttcctccttaccacg |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19166482 |
cccgcttcttccccttacaaccgtcgcagctccctcacgctttctcacattcttttctccctcaccagtaccgctctccacctccttcctccttactacg |
19166383 |
T |
|
| Q |
544 |
ccaacatctttacaccctactgacttagaaacccttaagacaaccaaaccagacattgttgagaacattacataacttatatggatttttgatgttcgta |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19166382 |
ccaacatctttacaccctactgacttagaaacccttaagataaccaaaccagacattgttgagaacattacataacttatatggatttttgacgttcgta |
19166283 |
T |
|
| Q |
644 |
aagcgagcaaaaccataaac |
663 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19166282 |
aagcgagcaaaaccataaac |
19166263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 19166969 - 19166899
Alignment:
| Q |
16 |
atcagcagcatcattaaatacttgtaaaacatcaccattatcacggcaacgtatcaaaccccgcatcctcc |
86 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19166969 |
atcagcagcatcattaaaaacttgtaaaacatcaccattatcacggcaacgtatcaaaccccgcatcctcc |
19166899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University