View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_low_5 (Length: 540)

Name: NF16512_low_5
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_low_5
NF16512_low_5
[»] chr8 (43 HSPs)
chr8 (11-525)||(39848283-39848799)
chr8 (11-523)||(38632572-38633087)
chr8 (11-357)||(38453675-38454020)
chr8 (33-403)||(34916096-34916465)
chr8 (226-440)||(39848647-39848861)
chr8 (63-290)||(34533703-34533927)
chr8 (32-290)||(34916371-34916628)
chr8 (64-440)||(34533566-34533939)
chr8 (63-290)||(34533841-34534065)
chr8 (80-275)||(38453608-38453800)
chr8 (226-403)||(38453613-38453790)
chr8 (226-401)||(38632975-38633149)
chr8 (74-173)||(34539015-34539114)
chr8 (85-290)||(39848659-39848861)
chr8 (63-403)||(34916266-34916603)
chr8 (225-390)||(34544774-34544939)
chr8 (80-164)||(34549178-34549262)
chr8 (82-252)||(34544772-34544939)
chr8 (19-111)||(34544845-34544939)
chr8 (227-324)||(34539027-34539124)
chr8 (84-169)||(38632548-38632633)
chr8 (85-172)||(38633062-38633149)
chr8 (63-173)||(34916542-34916652)
chr8 (225-290)||(34549182-34549247)
chr8 (455-525)||(38453605-38453675)
chr8 (447-525)||(38632809-38632887)
chr8 (11-157)||(34533925-34534073)
chr8 (448-525)||(34916549-34916626)
chr8 (69-169)||(39848261-39848361)
chr8 (210-290)||(39848281-39848361)
chr8 (96-171)||(34548525-34548600)
chr8 (447-502)||(34916134-34916189)
chr8 (100-159)||(36951478-36951537)
chr8 (447-525)||(34533709-34533787)
chr8 (448-502)||(34916411-34916465)
chr8 (447-525)||(38453873-38453951)
chr8 (359-440)||(38633073-38633154)
chr8 (372-440)||(38453621-38453689)
chr8 (455-502)||(34549175-34549222)
chr8 (447-489)||(34544897-34544939)
chr8 (448-502)||(34916273-34916327)
chr8 (447-500)||(34533847-34533900)
chr8 (243-303)||(36951475-36951535)
[»] chr4 (4 HSPs)
chr4 (13-289)||(44474388-44474663)
chr4 (226-433)||(44474520-44474727)
chr4 (80-172)||(44474640-44474732)
chr4 (455-526)||(44474664-44474735)
[»] chr3 (5 HSPs)
chr3 (32-357)||(7045895-7046219)
chr3 (80-139)||(7045817-7045876)
chr3 (455-520)||(7045814-7045879)
chr3 (226-283)||(7045822-7045879)
chr3 (21-78)||(7046160-7046219)


Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 39848799 - 39848283
Alignment:
Q  11 catcaaagacatcaccagcagcccaactcataatccctgttccatccatt--gtcttttttccaatttccgatgtagacatccccatttgcaaatctata 108  Q
    |||| |||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39848799 catcgaagacatcaccaacaacccaactcataatccctgttccatccattttgtcttttttccaatttccgatgtagacatccccatttgcaaatctata 39848700  T
Q  109 aactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgtt 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39848699 aactccaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctctcccatcatccattttccatgtt 39848600  T
Q  209 ttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtat 308  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39848599 ttccaatttccaatggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatctccagtat 39848500  T
Q  309 cccagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcag 408  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39848499 cccaactcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtataag 39848400  T
Q  409 cgcaattgatcgacaaccatcaaaaacatcactacaagtccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||     
T  39848399 cgcaattgatcgacaaccatcaaaaacatcactacaagtccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaag 39848300  T
Q  509 tcatttgaccaacaacc 525  Q
    |||||||||||||||||    
T  39848299 tcatttgaccaacaacc 39848283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 38633087 - 38632572
Alignment:
Q  11 catcaaagacatcaccagcagcccaactcataatccctgttccatccattgtct-tttttccaatttccgatgtagacatccccatttgcaaatctataa 109  Q
    |||| ||||||||||||| ||||||| ||||||||||| ||||||||||| | | |||||||||||||| | ||| |||||||||||||||||| |||||    
T  38633087 catcgaagacatcaccagtagcccaagtcataatccctattccatccattttgtctttttccaatttcctacgtaaacatccccatttgcaaatttataa 38632988  T
Q  110 actctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttt 209  Q
    |||| |||||||| ||||||||||||||||| | ||||||||||||||||||| |||||  |||| ||||||  | |||||| |||||||||   | |||    
T  38632987 actccaaatccatatctaagtccatttgacaaataaccatcaaaaacatcaccgttagctgaatccaaaatccatctcccataatccattttgtctattt 38632888  T
Q  210 tccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatc 309  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||  |||||||| |||||||||||||| ||||||||| |||||| |    
T  38632887 tccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacatcaccagtagc 38632788  T
Q  310 ccagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagc 409  Q
    ||| |||||||| |||  ||||||| ||   | |||||||||| |||| || ||||||  | ||| |||||||||||||||||||||||||||| | |      
T  38632787 ccaactcataattccttttccatccatt--gtcttttttccaatttcccatgtagacatgcccatctgcatatctataaactccaaatccatgtctaaat 38632690  T
Q  410 gcaattgatcgacaaccatcaaaaacatcactacaagtccaatttccaatgt----agacgtccccatttgcaaatctagaaactccatatccatgtaca 505  Q
     || ||||| |||||||||||||| |||||| |  || ||||| |||| |||    |||| ||||||||||||  |||| |||||||| ||||||||| |    
T  38632689 ccatttgatagacaaccatcaaaagcatcaccatcagcccaatctccagtgtagacagacatccccatttgcagctctaaaaactccaaatccatgtaga 38632590  T
Q  506 aaatcatttgaccaacaa 523  Q
    |   ||||||||||||||    
T  38632589 agtccatttgaccaacaa 38632572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 38453675 - 38454020
Alignment:
Q  11 catcaaagacatcaccagcagcccaactcataatccctgttccatccatt--gtcttttttccaatttccgatgtagacatccccatttgcaaatctata 108  Q
    ||||||| |||||||||  |||||||||||| ||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  38453675 catcaaaaacatcaccattagcccaactcatgatccctgttccatccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctata 38453774  T
Q  109 aactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgtt 208  Q
    ||||| || |||||||||||||||||  |||| ||||||||||||   |||||| |||| |||||  |||||| || | |   |||||| | ||| || |    
T  38453775 aactccaagtccatgtctaagtccatgcgacagacaaccatcaaattgatcaccgttagtccaattcaaaatccctcttc---catccaatctccctgct 38453871  T
Q  209 ttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtat 308  Q
    |||||||||||||||   |||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||| |||  |     
T  38453872 ttccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccatcag 38453971  T
Q  309 cccagctcataatccctaatccatccctttcatgttttttccaaattcc 357  Q
     ||| |||||| |||||  |||||| |||| || |||||||||| ||||    
T  38453972 gccaactcatagtccctcttccatctcttttatcttttttccaatttcc 38454020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 33 - 403
Target Start/End: Original strand, 34916096 - 34916465
Alignment:
Q  33 ccaactcataatccctgttccatccattgtctt--ttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagt 130  Q
    |||| ||||||||||| ||||||||||| | ||  |||||||||||||  |||||||||| |||||||||||||||||||||| | | |||||| |  ||    
T  34916096 ccaattcataatccctcttccatccattttattatttttccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgtttctgt 34916195  T
Q  131 ccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacat 230  Q
    |||||||||  | ||||||| ||||||||||| |||||||| |  | |||| || | |||||   | ||| || | ||| ||||||||||||| |||| |    
T  34916196 ccatttgaccaataaccatcgaaaacatcaccgttagcccatttcataatcccttttccatc---cctttcccctttttcccaatttccagtgtagacgt 34916292  T
Q  231 ccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccctaatcc 330  Q
      ||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| | | | ||| || ||||  |||||||||||  |||    
T  34916293 ttccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcaccattaccccaattcataatcccttttcc 34916392  T
Q  331 atccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 403  Q
    |||| ||||   ||||| |||| ||||   ||||||| || |||||||| |||||||||||||| ||||||||    
T  34916393 atccttttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgt 34916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 226 - 440
Target Start/End: Complemental strand, 39848861 - 39848647
Alignment:
Q  226 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 325  Q
    ||||||||| || ||  |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||  | |||| ||||||||||||    
T  39848861 gacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataatccct 39848762  T
Q  326 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaac 425  Q
      ||||||| |||  | |||||||||| ||||||| |||||| || |||||||| ||||||||||||||||||||||| | ||  || ||||   |||||    
T  39848761 gttccatccattttgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaac 39848662  T
Q  426 catcaaaaacatcac 440  Q
    |||||||||||||||    
T  39848661 catcaaaaacatcac 39848647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 34533703 - 34533927
Alignment:
Q  63 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 162  Q
    |||||||||||| |||  ||| |||||||||||||| ||||||| |||||| | |||||||||||||||||||||||  ||||||||| |||||| ||||    
T  34533703 cttttttccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacacc 34533802  T
Q  163 attagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatcca 262  Q
    |||||||||    | |||| || | |||||||   ||  || | ||||||||| |||||||  |||||||||||||||  ||||||||||||||||||||    
T  34533803 attagcccatctcataatcccttttccatcat---ttcccccttttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatcca 34533899  T
Q  263 tgtgcaagtccatttgaccaacaaccat 290  Q
    | |  ||||| |||||||||||||||||    
T  34533900 tctttaagtctatttgaccaacaaccat 34533927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 290
Target Start/End: Original strand, 34916371 - 34916628
Alignment:
Q  32 cccaactcataatccctgttccatccattgt--cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaag 129  Q
    ||||| ||||||||||| |||||||| ||    |||||| |||||||||    ||||||||||||||||||||||||||||||| | |||||||| || |    
T  34916371 cccaattcataatcccttttccatccttttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgtttatg 34916470  T
Q  130 tccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagaca 229  Q
    ||||||||||  | ||||||| ||||||||| | |||||||| |  | |||| || | ||||    | ||| || | ||| ||||||||||||| ||||     
T  34916471 tccatttgaccaataaccatcgaaaacatcatcgttagcccatttcataatcccttttccatg---cctttcccctttttcccaatttccagtgtagacg 34916567  T
Q  230 tccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 290  Q
    |  |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34916568 tttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccat 34916628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 64 - 440
Target Start/End: Original strand, 34533566 - 34533939
Alignment:
Q  64 ttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacca 163  Q
    ||||||||| ||||| || |||||||||||||| ||| || ||||||||| | |||||||| ||||||||||| ||  ||||||||| |||||||||||     
T  34533566 ttttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatcaccg 34533665  T
Q  164 ttagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatccat 263  Q
       |||||      |||| || | ||||| |   ||| || | ||||||||| |||| ||  ||||||||||||||   ||||| |||||||||||||||    
T  34533666 cctgcccatctcttaatcccttttccatcct---tttccccttttttccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccat 34533762  T
Q  264 gtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccctaatccatccctttcatgttttttccaaattccgatata 363  Q
    ||  ||||||||||||||||||||||| ||| ||| | ||| || |||| ||||||||||||  ||||||  || |   ||||||||||  |||  | |     
T  34533763 gtctaagtccatttgaccaacaaccatcgaaaacaacaccattagcccatctcataatcccttttccatcatttcccccttttttccaatgtccagtgtg 34533862  T
Q  364 gacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcac 440  Q
    |||| || ||||||||||||||||||||||| |||||| | | ||   | |||| | ||||||||||||||||||||    
T  34533863 gacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccatcaaaaacatcac 34533939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 34533841 - 34534065
Alignment:
Q  63 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 162  Q
    |||||||||||| |||  ||| |||||||||||||||| |||||||||||| | |||||| | |||||| |||||||  |||||||||||||||||||||    
T  34533841 cttttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccatcaaaaacatcacc 34533940  T
Q  163 attagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatcca 262  Q
    || | ||||||  | |||| || |||   |||| |||||||   ||| |||||||||  |  | ||||| |||||| |  |||||||||| |||| ||||    
T  34533941 atcaacccaattcataatccctttcc---catctattttcccattttcccaatttcctctataaacatctccatttacatatctataaaccccatgtcca 34534037  T
Q  263 tgtgcaagtccatttgaccaacaaccat 290  Q
    |||  |||||||||||||||||||||||    
T  34534038 tgtttaagtccatttgaccaacaaccat 34534065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 80 - 275
Target Start/End: Original strand, 38453608 - 38453800
Alignment:
Q  80 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaa 179  Q
    |||| |||||||||||||||||||||| |||||| | |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||   |  |    
T  38453608 atgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcaccattagcccaactcatga 38453707  T
Q  180 tcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccat 275  Q
    || |||| |   |||||||||    |  |||||||||||| ||| |||||||||||||| |  ||||||||||||||  |||||||  ||||||||    
T  38453708 tccctgttc---catccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctataaactccaagtccatgtctaagtccat 38453800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 226 - 403
Target Start/End: Original strand, 38453613 - 38453790
Alignment:
Q  226 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 325  Q
    |||||||||||||||  ||||| |||||||| ||||||||  |||||||||||||||||||||||  || ||||| ||| || |||| ||||| ||||||    
T  38453613 gacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcaccattagcccaactcatgatccct 38453712  T
Q  326 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 403  Q
      ||||||| |||| | || ||||||| ||||| | |||||| || ||||| || ||||||||||||||| |||||||    
T  38453713 gttccatccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctataaactccaagtccatgt 38453790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 226 - 401
Target Start/End: Complemental strand, 38633149 - 38632975
Alignment:
Q  226 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 325  Q
    |||||||||||| ||  |||||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||| |||||| ||||  |||||||||||    
T  38633149 gacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaagtcataatccct 38633050  T
Q  326 aatccatccctttcatgt-tttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccat 401  Q
    | ||||||| |||  ||| ||||||||| |||| |  || ||| || |||||||| || ||||||||||||||||||    
T  38633049 attccatccattt--tgtctttttccaatttcctacgtaaacatccccatttgcaaatttataaactccaaatccat 38632975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 34539015 - 34539114
Alignment:
Q  74 tttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaat 173  Q
    ||||||| ||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||  |||||||| ||||||||| |||||||||||||    
T  34539015 tttccgaagtacacatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaat 34539114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 290
Target Start/End: Complemental strand, 39848861 - 39848659
Alignment:
Q  85 gacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgct 184  Q
    ||||||||| || ||| |||||||||||| | |||||||| ||||||||||||||  ||||||||| || |||||||||  | |||||   | |||| ||    
T  39848861 gacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataatccct 39848762  T
Q  185 gtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaac 284  Q
    || |   ||||||||||   | |||||||||||||  || ||||||||||||||||  |||||||||||||| ||||||||  |||||||||||||  ||    
T  39848761 gttc---catccattttgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatac 39848665  T
Q  285 aaccat 290  Q
    ||||||    
T  39848664 aaccat 39848659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 63 - 403
Target Start/End: Original strand, 34916266 - 34916603
Alignment:
Q  63 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 162  Q
    |||||| |||||||||  ||||||| |  ||||| ||| |||||||||||| | ||||||||  |||||||||||||  | ||||||| |||| | ||||    
T  34916266 ctttttcccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcacc 34916365  T
Q  163 attagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatcca 262  Q
    |||| ||||||  | |||| || | ||||| |   |||  | | ||| |||||||||||   ||||||||||||||||  ||||||||||||||||||||    
T  34916366 attaccccaattcataatcccttttccatcct---tttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatcca 34916462  T
Q  263 tgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccctaatccatccctttcatgttttttccaaattccgatat 362  Q
    |||  | |||||||||||||| |||||| ||| |||||  |  || ||||  |||||||||||  ||||| ||||||   ||||| |||| ||||  | |    
T  34916463 tgtttatgtccatttgaccaataaccatcgaaaacatcatcgttagcccatttcataatcccttttccatgcctttcccctttttcccaatttccagtgt 34916562  T
Q  363 agacacccacatttgcatatctataaactccaaatccatgt 403  Q
    ||||     |||||||| |||||||||||||| ||||||||    
T  34916563 agacgtttccatttgcagatctataaactccatatccatgt 34916603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 225 - 390
Target Start/End: Original strand, 34544774 - 34544939
Alignment:
Q  225 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccc 324  Q
    |||||| ||||||||   |||||||||||||||||||||||  | |||||||||||||||| |||| ||| ||||| ||| || ||||  ||||||||||    
T  34544774 agacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaattcataatccc 34544873  T
Q  325 taatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaac 390  Q
    |  ||||||| ||| ||  ||||||||| | || || |||||| || |||||||| ||||||||||    
T  34544874 tcttccatccattttatcatttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 34549178 - 34549262
Alignment:
Q  80 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccat 164  Q
    |||||||||| |||||||| |||||||||||||| | |||||||| |||||||||| |||  |||||||||||||||||||||||    
T  34549178 atgtagacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccatcaaaaacatcaccat 34549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 34544772 - 34544939
Alignment:
Q  82 gtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatc 181  Q
    |||||||| |||||||| |||||||||||||| | ||||||||||| |||||||||||  ||| ||||  ||||||||||||||| ||||||  | ||||    
T  34544772 gtagacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaattcataatc 34544871  T
Q  182 gctgtcccatcatccatttt-ccatgttttccaatttccagtggagacatccccatttgcggatctataaac 252  Q
     || | |   ||||||||||  ||| |||||||||| ||| || ||||||||||||||||  ||||||||||    
T  34544872 cctcttc---catccattttatcat-ttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 34544845 - 34544939
Alignment:
Q  19 acatcaccagcagcccaactcataatccctgttccatccattgtct--tttttccaatttccgatgtagacatccccatttgcaaatctataaac 111  Q
    |||||||||  | ||||| ||||||||||| ||||||||||| | |  ||||||||||| || ||||||||||||||||||||||||||||||||    
T  34544845 acatcaccattaacccaattcataatccctcttccatccattttatcatttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 34539027 - 34539124
Alignment:
Q  227 acatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccc 324  Q
    ||||||||||||||  |||||||||||||| | ||||||  |||||||||||||||||||||||  || ||||||||| || ||||  ||||||||||    
T  34539027 acatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaattcataatccc 34539124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 38632633 - 38632548
Alignment:
Q  84 agacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcc 169  Q
    |||||||||||||||||  |||| |||||| ||||||||||  |||||||||||||  |||| |||| ||||||||||||||||||    
T  38632633 agacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaagcatccaaaacatcaccattagcc 38632548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 38633149 - 38633062
Alignment:
Q  85 gacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaa 172  Q
    |||||||||||| ||| |||||||||||| | |||||||| |||| |||||||||  ||||||||| || ||||||||| ||||||||    
T  38633149 gacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaa 38633062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 34916542 - 34916652
Alignment:
Q  63 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 162  Q
    |||||| |||||||||  ||||||| |  ||||||||| |||||||||||| | ||||||||  |||||||||||||  ||||||||| |||| | ||||    
T  34916542 ctttttcccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccatcgaaaatagcacc 34916641  T
Q  163 attagcccaat 173  Q
    |||| ||||||    
T  34916642 attaccccaat 34916652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 34549182 - 34549247
Alignment:
Q  225 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 290  Q
    |||||| ||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  34549182 agacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccat 34549247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 455 - 525
Target Start/End: Original strand, 38453605 - 38453675
Alignment:
Q  455 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 525  Q
    ||||||| ||| |||||||||||||||||| |||||||| ||||||||| ||   ||||||||||||||||    
T  38453605 ccaatgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaacc 38453675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 447 - 525
Target Start/End: Complemental strand, 38632887 - 38632809
Alignment:
Q  447 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 525  Q
    ||||||||||| ||||||| |||||||||||| ||||| |||||||| ||||||||| ||   ||| ||||||||||||    
T  38632887 tccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaacc 38632809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 34533925 - 34534073
Alignment:
Q  11 catcaaagacatcaccagcagcccaactcataatccctgttccatccattgtct--tttttccaatttccgatgtagacatccccatttgcaaatctata 108  Q
    ||||||| ||||||||| || ||||| ||||||||||| | ||||| ||| ||   |||| |||||||||  | || ||||| |||||| || |||||||    
T  34533925 catcaaaaacatcaccatcaacccaattcataatccctttcccatctattttcccattttcccaatttcctctataaacatctccatttacatatctata 34534024  T
Q  109 aactctaaatccatgtctaagtccatttgacatacaaccatcaaaaaca 157  Q
    ||| | |  ||||||| ||||||||||||||  ||||||||| ||||||    
T  34534025 aaccccatgtccatgtttaagtccatttgaccaacaaccatcgaaaaca 34534073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 525
Target Start/End: Original strand, 34916549 - 34916626
Alignment:
Q  448 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 525  Q
    |||||||||| |||||||||  ||||||||| ||||| |||||||||||||||||  ||   ||||||||||||||||    
T  34916549 ccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaacc 34916626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 39848361 - 39848261
Alignment:
Q  69 tccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgt-ctaagtccatttgacatacaaccatcaaaaacatcaccattag 167  Q
    ||||||||||  ||||||| || ||||||||||||||| |||||| | |||||| | | ||||| |||||||  |||||||| |||||||||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtc-atttgaccaacaaccattaaaaacatcaccattag 39848263  T
Q  168 cc 169  Q
    ||    
T  39848262 cc 39848261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 39848361 - 39848281
Alignment:
Q  210 tccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 290  Q
    |||||||||||||| |||| || ||||||||  ||||| ||||||||||||||| | |||   ||||||||||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaaccat 39848281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 34548525 - 34548600
Alignment:
Q  96 ttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagccca 171  Q
    |||||||| ||||||||  |||||||||||||| ||||||||||   | |||||| |||| |||||||||||||||    
T  34548525 ttgcaaatatataaacttcaaatccatgtctaactccatttgaccagccaccatcgaaaatatcaccattagccca 34548600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 502
Target Start/End: Original strand, 34916134 - 34916189
Alignment:
Q  447 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 502  Q
    ||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||    
T  34916134 tccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgt 34916189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 36951537 - 36951478
Alignment:
Q  100 aaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatc 159  Q
    |||||||||||||| | |||| ||||||||||||||| ||  ||||||||||||||||||    
T  36951537 aaatctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatc 36951478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 525
Target Start/End: Original strand, 34533709 - 34533787
Alignment:
Q  447 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 525  Q
    |||||| |||| ||| ||| |||||||||| ||||||| |||||||||||||||||  ||   ||||||||||||||||    
T  34533709 tccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaacc 34533787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 34916411 - 34916465
Alignment:
Q  448 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 502  Q
    ||||||||||   ||||| |||||||||||||||||| |||||||||||||||||    
T  34916411 ccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgt 34916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 525
Target Start/End: Original strand, 38453873 - 38453951
Alignment:
Q  447 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 525  Q
    ||||||||||| |||  || ||||||||| || ||||| |||||||||||||||||||||    |||||||||||||||    
T  38453873 tccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaacc 38453951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 38633154 - 38633073
Alignment:
Q  359 atatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcac 440  Q
    |||| |||| || |||| |||||||||||||||||| |||||||||| ||| || |||| | ||||||||| || |||||||    
T  38633154 atatcgacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcac 38633073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 38453621 - 38453689
Alignment:
Q  372 catttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcac 440  Q
    |||||||| ||||| |||||||| |||||||||| ||  || |||| | ||||||||||||||||||||    
T  38453621 catttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcac 38453689  T

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Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Original strand, 34549175 - 34549222
Alignment:
Q  455 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 502  Q
    ||||||||||| | |||||||| ||||||| |||||||||||||||||    
T  34549175 ccaatgtagacattcccatttgaaaatctataaactccatatccatgt 34549222  T

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Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Original strand, 34544897 - 34544939
Alignment:
Q  447 tccaatttccaatgtagacgtccccatttgcaaatctagaaac 489  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  34544897 tccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

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Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 34916273 - 34916327
Alignment:
Q  448 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 502  Q
    |||||||||| |||||||||  ||||| ||| ||||| |||||||||||||||||    
T  34916273 ccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgt 34916327  T

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Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 34533847 - 34533900
Alignment:
Q  447 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccat 500  Q
    |||||| |||| ||| ||| |||||||||||| ||||| |||||||||||||||    
T  34533847 tccaatgtccagtgtggacatccccatttgcatatctataaactccatatccat 34533900  T

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Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 36951535 - 36951475
Alignment:
Q  243 atctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgcc 303  Q
    |||||||||||||| |||| |||  |||||||||| ||||||||||||  || ||||||||    
T  36951535 atctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatcgcc 36951475  T

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Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 44474663 - 44474388
Alignment:
Q  13 tcaaagacatcaccagcagcccaactcataatccctgttccatccatt--gtcttttttccaatttccgatgtagacatccccatttgcaaatctataaa 110  Q
    ||||| |||||||||  || |||||||||  ||||| |||||||||||  ||| ||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  44474663 tcaaaaacatcaccattagtccaactcatggtccctcttccatccattttgtcatttttccaatttccgatatagacatccccatttacaaatgtataaa 44474564  T
Q  111 ctctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgtttt 210  Q
    ||| ||||||||||||||| |||||||||| |||||||| ||||  |||| ||||||||||||  ||| || || | |   |||||| ||||| ||||||    
T  44474563 ctccaaatccatgtctaagcccatttgacagacaaccattaaaatgatcatcattagcccaattcaaattccctcttc---catccaatttccctgtttt 44474467  T
Q  211 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaacca 289  Q
    ||||||||||| | |||||||||||| |   ||| || |||||||| |||||||| |||| |||||||||||| |||||    
T  44474466 ccaatttccagcgtagacatccccatctagagatgtaaaaactccaaatccatgtacaaggccatttgaccaagaacca 44474388  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 433
Target Start/End: Complemental strand, 44474727 - 44474520
Alignment:
Q  226 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 325  Q
    |||||||||||||||  || || |||||||| ||||||||  ||||||||||||||| ||||| |  || ||||| ||| ||  ||| |||||  |||||    
T  44474727 gacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaacatcaccattagtccaactcatggtccct 44474628  T
Q  326 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaac 425  Q
      ||||||| |||  |  ||||||||| |||||||||||||| || ||||| || || |||||||||||||||||||| | ||| || ||||  ||||||    
T  44474627 cttccatccattttgtcatttttccaatttccgatatagacatccccatttacaaatgtataaactccaaatccatgtctaagcccatttgacagacaac 44474528  T
Q  426 catcaaaa 433  Q
    ||| ||||    
T  44474527 cattaaaa 44474520  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 44474732 - 44474640
Alignment:
Q  80 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaa 172  Q
    |||| ||||||||||||||||||| || |||||| | |||||||| ||||||||||||||   ||||| ||||||||||||||||||| ||||    
T  44474732 atgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaacatcaccattagtccaa 44474640  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 526
Target Start/End: Complemental strand, 44474735 - 44474664
Alignment:
Q  455 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacct 526  Q
    ||||||| ||| ||||||||||||||| || |||||||| ||||||||| ||   |||||||||| ||||||    
T  44474735 ccaatgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaacct 44474664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 32 - 357
Target Start/End: Original strand, 7045895 - 7046219
Alignment:
Q  32 cccaactcataatccctgttccatccattgtctttt--ttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaag 129  Q
    |||||||||| |||||| ||||||||||| ||| ||  |||||||||||   ||||||||| ||||||  |||| ||||||||| |||||||| ||| ||    
T  7045895 cccaactcatgatccctcttccatccattttctcttctttccaatttcctccgtagacatcaccatttctaaatttataaactccaaatccatctctgag 7045994  T
Q  130 tccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttc-catgttttccaatttccagtggagac 228  Q
    |||||||||||  ||||||||||||  |||||||||| ||||||  |||||| || || |  ||||||||||| ||| ||||||||| ||||||| ||||    
T  7045995 tccatttgacaggcaaccatcaaaactatcaccattaacccaatataaaatccct-tctc--catccattttctcat-ttttccaatatccagtgtagac 7046090  T
Q  229 atccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccctaat 328  Q
    |||||| ||| |  || |||||  |||| || ||||| ||| ||||||| || ||  || ||| || | ||| ||| || |||| |||| |||||||  |    
T  7046091 atccccgtttccacatatataacttccaaattcatgtacaactccatttaactaaggactataaaaaaaatcaccattagcccaactcacaatccctttt 7046190  T
Q  329 ccatccctttcatgttttttccaaattcc 357  Q
    |||||| ||| || |||||||||| ||||    
T  7046191 ccatccattttatcttttttccaatttcc 7046219  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 7045817 - 7045876
Alignment:
Q  80 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgac 139  Q
    |||| |||||| |||||||||||| || |||||| | |||||||| ||||||||||||||    
T  7045817 atgttgacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgac 7045876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 7045814 - 7045879
Alignment:
Q  455 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaa 520  Q
    ||||||| ||| || |||||||||||| || |||||||||||||||||| ||   |||||||||||    
T  7045814 ccaatgttgacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgaccaa 7045879  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 7045822 - 7045879
Alignment:
Q  226 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaa 283  Q
    |||||| ||||||||  || || |||||||||||||||||  ||||||||||||||||    
T  7045822 gacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgaccaa 7045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 7046160 - 7046219
Alignment:
Q  21 atcaccagcagcccaactcataatccctgttccatcca--ttgtcttttttccaatttcc 78  Q
    |||||||  ||||||||||| ||||||| |||||||||  || |||||||||||||||||    
T  7046160 atcaccattagcccaactcacaatcccttttccatccattttatcttttttccaatttcc 7046219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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