View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16512_low_6 (Length: 452)
Name: NF16512_low_6
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 117 - 434
Target Start/End: Complemental strand, 2666181 - 2665869
Alignment:
| Q |
117 |
atgttctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgttgccctaagatgatggttacaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2666181 |
atgttctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgttgccctaagatgatggttacaaa |
2666082 |
T |
|
| Q |
217 |
cttgagtgcctttatagtttaagatgaggaatcagcctgtggagttttgacaagtagcaattacttgattattatatgatgaagagatcgatatccattt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2666081 |
cttgagtgcctttatagtttaagatgaggaatcagcctgtggagttttgacaagttgcaattacttgattattatatgatgaagagatcgatatccattt |
2665982 |
T |
|
| Q |
317 |
ttattttgtgatagtataatgatattcaaagataatgaactcatgactcatgagcttagaaaggtttggtttagttagctaaggatatgatcacaagaaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2665981 |
ttattttgtgatagtataatgatattcaaagataatgaactcatgactcatgagcttacaaa-----ggtttagttagctaaggatatgatcacaagaaa |
2665887 |
T |
|
| Q |
417 |
caaattacctcaagacct |
434 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
2665886 |
caaattatctcaagacct |
2665869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 2666283 - 2666222
Alignment:
| Q |
16 |
ttctttttcaaattgaattagcaggtttactcgctagaatctttcctcttatggttatctca |
77 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2666283 |
ttctttttcaaattgaaatagcaggtttactcgctagaatctttcctcttatggttatctca |
2666222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 2675256 - 2675185
Alignment:
| Q |
122 |
ctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgt |
193 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||| |||||| |||| |
|
|
| T |
2675256 |
ctatttatagtgtttcatgagtcgtgtatgataaccacgtgtctaacttcttgacacgtgcacaacatgtgt |
2675185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 2681571 - 2681501
Alignment:
| Q |
123 |
tatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgt |
193 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
2681571 |
tatttatagtgtttcataggtagtgtatgataaccacgtgtccaacttcttgacacgtccacaacacgtgt |
2681501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 2675145 - 2675084
Alignment:
| Q |
232 |
agtttaagatgaggaatcagcctgtggagttttgacaagtagcaattacttgattattatat |
293 |
Q |
| |
|
||||||||||||| || || ||||| || ||||||||||| || ||||||||| |||||||| |
|
|
| T |
2675145 |
agtttaagatgagaaaccaacctgtagaattttgacaagttgccattacttgagtattatat |
2675084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University