View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16512_low_7 (Length: 413)
Name: NF16512_low_7
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 6807196 - 6806796
Alignment:
| Q |
17 |
tactgcttactcaatggaagacaatgcactttggagtaggcgtttggttacttatgttgggcaggttgcggttgcaattttaatctttctcagatcatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6807196 |
tactgcttactcaatggaagacaatgcactttggagtaggcgtttggttacttatgttggacaggttgcggttgcaattttaatctttctccgatcatgg |
6807097 |
T |
|
| Q |
117 |
acaaatattggtcttaacatt---------------------gctagttttatcaaaatttgtgagagaattttggttttgtggcgtgcaagtagccaac |
195 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807096 |
acaaatactggtcttaacattctggcaataccaatattcattgctagttttatcaaaatttgtgagagaattttggttttgtggcgtgcaagtagccaac |
6806997 |
T |
|
| Q |
196 |
acttcaaggagtctttgtttcctgatcctgatccaggtcctaattatgcaagatacatggaaggatacaattcagcttctcatgaagggtatggagttga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6806996 |
acttcaaggagtctttgtttcctgatcctgatccaggtcctaattatgcaagatacatggaaggatacaattcagcttctcatgaagggtatggagttga |
6806897 |
T |
|
| Q |
296 |
tgtagaatgcctaattcaatctccatcaannnnnnnnnnnnnnnnnnttgatcatactcatgcaccttcacaaggaaacatcatcccattgccacaaact |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6806896 |
tgtagaatgcctaattcaatctccatcaactgctgctgctgctgctgttgatcatactcatgcaccttcacaaggaaacatcatcccattgccacaaact |
6806797 |
T |
|
| Q |
396 |
g |
396 |
Q |
| |
|
| |
|
|
| T |
6806796 |
g |
6806796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 7329381 - 7329058
Alignment:
| Q |
17 |
tactgcttactcaatggaagacaatgcactttggagtaggcgtttggttacttatgttgggcaggttgcggttgcaattttaatctttctcagatcatgg |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || || |||| ||||||| |||||| |||||| ||||||||| |
|
|
| T |
7329381 |
tactgcttactctatggaagacaatgcactttggagtaggcgtttggttacttatatcggacaagttgtggttgcatttttaacctttcttagatcatgg |
7329282 |
T |
|
| Q |
117 |
acaaatattggtcttaacat---------------------tgctagttttatcaaaatttgtgagagaattttggttttgtggcgtgcaagtagccaac |
195 |
Q |
| |
|
|||||| || ||||||||| ||| ||||||||||||| | || || |||| |||||||||| ||||||||||||||| |
|
|
| T |
7329281 |
acaaatgctgatcttaacattttggcagtaccgatattcattgccggttttatcaaaatcggagaaaggatttgggttttgtggtgtgcaagtagccaac |
7329182 |
T |
|
| Q |
196 |
acttcaaggagtctttgtttcctgatcctgatccaggtcctaattatgcaagatacatggaaggatacaattcagcttctcatgaagggtatggagttga |
295 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
7329181 |
aattcaaagagtctttgtttcctgatcccgattcagggcctaattatgcaagatatatggaagcatacaattcagcttcttatgaagggtatgatgttga |
7329082 |
T |
|
| Q |
296 |
tgtagaatgcctaattcaatctcc |
319 |
Q |
| |
|
|||| || |||| |||||| |||| |
|
|
| T |
7329081 |
tgtacaaggcctgattcaaactcc |
7329058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University