View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16512_low_8 (Length: 404)

Name: NF16512_low_8
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16512_low_8
NF16512_low_8
[»] chr8 (35 HSPs)
chr8 (11-389)||(39848283-39848661)
chr8 (11-387)||(38632572-38632950)
chr8 (90-304)||(39848647-39848861)
chr8 (90-267)||(38453613-38453790)
chr8 (90-265)||(38632975-38633149)
chr8 (75-267)||(34916273-34916465)
chr8 (71-304)||(34533706-34533939)
chr8 (72-221)||(38453871-38454020)
chr8 (75-154)||(34916549-34916628)
chr8 (89-254)||(34544774-34544939)
chr8 (71-203)||(34916131-34916263)
chr8 (75-267)||(34916411-34916603)
chr8 (91-188)||(34539027-34539124)
chr8 (71-154)||(39848659-39848742)
chr8 (89-154)||(34549182-34549247)
chr8 (311-366)||(39848684-39848739)
chr8 (319-389)||(38453605-38453675)
chr8 (311-389)||(38632809-38632887)
chr8 (71-164)||(34533568-34533661)
chr8 (312-389)||(34916549-34916626)
chr8 (74-154)||(39848281-39848361)
chr8 (311-366)||(34916134-34916189)
chr8 (311-389)||(34533709-34533787)
chr8 (312-366)||(34916411-34916465)
chr8 (311-389)||(38453873-38453951)
chr8 (223-304)||(38633073-38633154)
chr8 (236-304)||(38453621-38453689)
chr8 (107-154)||(34534018-34534065)
chr8 (319-366)||(34549175-34549222)
chr8 (72-139)||(38453733-38453800)
chr8 (311-353)||(34544897-34544939)
chr8 (312-366)||(34916273-34916327)
chr8 (207-304)||(34533566-34533663)
chr8 (311-364)||(34533847-34533900)
chr8 (107-167)||(36951475-36951535)
[»] chr4 (3 HSPs)
chr4 (90-297)||(44474520-44474727)
chr4 (56-153)||(44474388-44474485)
chr4 (319-390)||(44474664-44474735)
[»] chr3 (2 HSPs)
chr3 (319-384)||(7045814-7045879)
chr3 (90-147)||(7045822-7045879)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 39848661 - 39848283
Alignment:
Q  11 catcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatct 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39848661 catcaaaaacatcaccattagcccaatcgaaaatcgctctcccatcatccattttccatgttttccaatttccaatggagacatccccatttgcggatct 39848562  T
Q  111 ataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccctaatccatccctttcatgtttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  39848561 ataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatctccagtatcccaactcataatccctaatccatccctttcatgtttt 39848462  T
Q  211 ttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcactacaag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39848461 ttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtataagcgcaattgatcgacaaccatcaaaaacatcactacaag 39848362  T
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 389  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaacc 39848283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 38632950 - 38632572
Alignment:
Q  11 catcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtggagacatccccatttgcggatct 110  Q
    |||||||||||||||| |||||  |||| ||||||  | |||||| |||||||||   | ||||||||||||||||| |||||||||||||||| |||||    
T  38632950 catcaaaaacatcaccgttagctgaatccaaaatccatctcccataatccattttgtctattttccaatttccagtgtagacatccccatttgcagatct 38632851  T
Q  111 ataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccctaatccatccctttcatgtttt 210  Q
    |||||||||| ||||||||  |||||||| |||||||||||||| ||||||||| |||||| |||| |||||||| |||  ||||||| ||   | ||||    
T  38632850 ataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacatcaccagtagcccaactcataattccttttccatccatt--gtctttt 38632753  T
Q  211 ttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcactacaag 310  Q
    |||||| |||| || ||||||  | ||| |||||||||||||||||||||||||||| | |   || ||||| |||||||||||||| |||||| |  ||    
T  38632752 ttccaatttcccatgtagacatgcccatctgcatatctataaactccaaatccatgtctaaatccatttgatagacaaccatcaaaagcatcaccatcag 38632653  T
Q  311 tccaatttccaatgt----agacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaa 387  Q
     ||||| |||| |||    |||| ||||||||||||  |||| |||||||| ||||||||| ||   ||||||||||||||    
T  38632652 cccaatctccagtgtagacagacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaa 38632572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 90 - 304
Target Start/End: Complemental strand, 39848861 - 39848647
Alignment:
Q  90 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 189  Q
    ||||||||| || ||  |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||  | |||| ||||||||||||    
T  39848861 gacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataatccct 39848762  T
Q  190 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaac 289  Q
      ||||||| |||  | |||||||||| ||||||| |||||| || |||||||| ||||||||||||||||||||||| | ||  || ||||   |||||    
T  39848761 gttccatccattttgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaac 39848662  T
Q  290 catcaaaaacatcac 304  Q
    |||||||||||||||    
T  39848661 catcaaaaacatcac 39848647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 38453613 - 38453790
Alignment:
Q  90 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 189  Q
    |||||||||||||||  ||||| |||||||| ||||||||  |||||||||||||||||||||||  || ||||| ||| || |||| ||||| ||||||    
T  38453613 gacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcaccattagcccaactcatgatccct 38453712  T
Q  190 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 267  Q
      ||||||| |||| | || ||||||| ||||| | |||||| || ||||| || ||||||||||||||| |||||||    
T  38453713 gttccatccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctataaactccaagtccatgt 38453790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 265
Target Start/End: Complemental strand, 38633149 - 38632975
Alignment:
Q  90 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 189  Q
    |||||||||||| ||  |||||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||| |||||| ||||  |||||||||||    
T  38633149 gacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaagtcataatccct 38633050  T
Q  190 aatccatccctttcatgt-tttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccat 265  Q
    | ||||||| |||  ||| ||||||||| |||| |  || ||| || |||||||| || ||||||||||||||||||    
T  38633049 attccatccattt--tgtctttttccaatttcctacgtaaacatccccatttgcaaatttataaactccaaatccat 38632975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 267
Target Start/End: Original strand, 34916273 - 34916465
Alignment:
Q  75 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcc 174  Q
    ||||||||||||| |||| |  ||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| | | | ||| || ||    
T  34916273 ccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcaccattaccc 34916372  T
Q  175 cagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 267  Q
    ||  |||||||||||  ||||||| ||||   ||||| |||| ||||   ||||||| || |||||||| |||||||||||||| ||||||||    
T  34916373 caattcataatcccttttccatccttttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgt 34916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 304
Target Start/End: Original strand, 34533706 - 34533939
Alignment:
Q  71 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagt 170  Q
    ||||||||| |||| ||  ||||||||||||||   ||||| |||||||||||||||||  ||||||||||||||||||||||| ||| ||| | ||| |    
T  34533706 ttttccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacaccatt 34533805  T
Q  171 atcccagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatc 270  Q
    | |||| ||||||||||||  ||||||  || |   ||||||||||  |||  | | |||| || ||||||||||||||||||||||| |||||| | |     
T  34533806 agcccatctcataatcccttttccatcatttcccccttttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatccatcttta 34533905  T
Q  271 agcgcaattgatcgacaaccatcaaaaacatcac 304  Q
    ||   | |||| | ||||||||||||||||||||    
T  34533906 agtctatttgaccaacaaccatcaaaaacatcac 34533939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 38453871 - 38454020
Alignment:
Q  72 tttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagta 171  Q
    ||||||||||||||||   |||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||| |||  |    
T  38453871 tttccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccatca 38453970  T
Q  172 tcccagctcataatccctaatccatccctttcatgttttttccaaattcc 221  Q
      ||| |||||| |||||  |||||| |||| || |||||||||| ||||    
T  38453971 ggccaactcatagtccctcttccatctcttttatcttttttccaatttcc 38454020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 34916549 - 34916628
Alignment:
Q  75 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 154  Q
    ||||||||||||| |||| |  |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34916549 ccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccat 34916628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 34544774 - 34544939
Alignment:
Q  89 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccc 188  Q
    |||||| ||||||||   |||||||||||||||||||||||  | |||||||||||||||| |||| ||| ||||| ||| || ||||  ||||||||||    
T  34544774 agacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaattcataatccc 34544873  T
Q  189 taatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaac 254  Q
    |  ||||||| ||| ||  ||||||||| | || || |||||| || |||||||| ||||||||||    
T  34544874 tcttccatccattttatcatttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 34916131 - 34916263
Alignment:
Q  71 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagt 170  Q
    ||||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||||||    |||||||||||||| |||||| ||| ||||| ||  |    
T  34916131 ttttccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgtttctgtccatttgaccaataaccatcgaaaacatcaccgtt 34916230  T
Q  171 atcccagctcataatccctaatccatccctttc 203  Q
    | ||||  |||||||||||  ||||||||||||    
T  34916231 agcccatttcataatcccttttccatccctttc 34916263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 75 - 267
Target Start/End: Original strand, 34916411 - 34916603
Alignment:
Q  75 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcc 174  Q
    |||||||||||   ||||||||||||||||  |||||||||||||||||||||||  | |||||||||||||| |||||| ||| |||||  |  || ||    
T  34916411 ccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgtttatgtccatttgaccaataaccatcgaaaacatcatcgttagcc 34916510  T
Q  175 cagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 267  Q
    ||  |||||||||||  ||||| ||||||   ||||| |||| ||||  | |||||     |||||||| |||||||||||||| ||||||||    
T  34916511 catttcataatcccttttccatgcctttcccctttttcccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgt 34916603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 34539027 - 34539124
Alignment:
Q  91 acatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccc 188  Q
    ||||||||||||||  |||||||||||||| | ||||||  |||||||||||||||||||||||  || ||||||||| || ||||  ||||||||||    
T  34539027 acatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaattcataatccc 34539124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 39848742 - 39848659
Alignment:
Q  71 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 154  Q
    |||||||||||||  || ||||||||||||||||  |||||||||||||| ||||||||  |||||||||||||  ||||||||    
T  39848742 ttttccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaaccat 39848659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 34549182 - 34549247
Alignment:
Q  89 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 154  Q
    |||||| ||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  34549182 agacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccat 34549247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 39848739 - 39848684
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 366  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||    
T  39848739 tccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgt 39848684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 38453605 - 38453675
Alignment:
Q  319 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 389  Q
    ||||||| ||| |||||||||||||||||| |||||||| ||||||||| ||   ||||||||||||||||    
T  38453605 ccaatgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaacc 38453675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 38632887 - 38632809
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 389  Q
    ||||||||||| ||||||| |||||||||||| ||||| |||||||| ||||||||| ||   ||| ||||||||||||    
T  38632887 tccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaacc 38632809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 34533568 - 34533661
Alignment:
Q  71 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatc 164  Q
    ||||||| |||||| |  ||||||||||||| ||  || ||||||||||| ||||||||  |||||||||| |||||||||||| ||| |||||    
T  34533568 ttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatc 34533661  T

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Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 34916549 - 34916626
Alignment:
Q  312 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 389  Q
    |||||||||| |||||||||  ||||||||| ||||| |||||||||||||||||  ||   ||||||||||||||||    
T  34916549 ccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaacc 34916626  T

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Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 39848361 - 39848281
Alignment:
Q  74 tccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 154  Q
    |||||||||||||| |||| || ||||||||  ||||| ||||||||||||||| | |||   ||||||||||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaaccat 39848281  T

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Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 34916134 - 34916189
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 366  Q
    ||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||    
T  34916134 tccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgt 34916189  T

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Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 34533709 - 34533787
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 389  Q
    |||||| |||| ||| ||| |||||||||| ||||||| |||||||||||||||||  ||   ||||||||||||||||    
T  34533709 tccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaacc 34533787  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 34916411 - 34916465
Alignment:
Q  312 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 366  Q
    ||||||||||   ||||| |||||||||||||||||| |||||||||||||||||    
T  34916411 ccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgt 34916465  T

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Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 38453873 - 38453951
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 389  Q
    ||||||||||| |||  || ||||||||| || ||||| |||||||||||||||||||||    |||||||||||||||    
T  38453873 tccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaacc 38453951  T

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Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 38633154 - 38633073
Alignment:
Q  223 atatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcac 304  Q
    |||| |||| || |||| |||||||||||||||||| |||||||||| ||| || |||| | ||||||||| || |||||||    
T  38633154 atatcgacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcac 38633073  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 38453621 - 38453689
Alignment:
Q  236 catttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcac 304  Q
    |||||||| ||||| |||||||| |||||||||| ||  || |||| | ||||||||||||||||||||    
T  38453621 catttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcac 38453689  T

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Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 34534018 - 34534065
Alignment:
Q  107 atctataaactccatatccatgtgcaagtccatttgaccaacaaccat 154  Q
    |||||||||| |||| |||||||  |||||||||||||||||||||||    
T  34534018 atctataaaccccatgtccatgtttaagtccatttgaccaacaaccat 34534065  T

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Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 34549175 - 34549222
Alignment:
Q  319 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 366  Q
    ||||||||||| | |||||||| ||||||| |||||||||||||||||    
T  34549175 ccaatgtagacattcccatttgaaaatctataaactccatatccatgt 34549222  T

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Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 38453733 - 38453800
Alignment:
Q  72 tttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccat 139  Q
    |||||||||||| ||| |||||||||||||| |  ||||||||||||||  |||||||  ||||||||    
T  38453733 tttccaatttccggtgtagacatccccatttacaaatctataaactccaagtccatgtctaagtccat 38453800  T

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Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 34544897 - 34544939
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaac 353  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  34544897 tccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 34916273 - 34916327
Alignment:
Q  312 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgt 366  Q
    |||||||||| |||||||||  ||||| ||| ||||| |||||||||||||||||    
T  34916273 ccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgt 34916327  T

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Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 34533566 - 34533663
Alignment:
Q  207 ttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaaccatcaaaaacatcac 304  Q
    |||||||||  |||| ||||||||| || |||| |||||| ||||||||||| |||||||| | ||  || || | | ||||||||| ||||||||||    
T  34533566 ttttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatcac 34533663  T

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Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 34533847 - 34533900
Alignment:
Q  311 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccat 364  Q
    |||||| |||| ||| ||| |||||||||||| ||||| |||||||||||||||    
T  34533847 tccaatgtccagtgtggacatccccatttgcatatctataaactccatatccat 34533900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 36951535 - 36951475
Alignment:
Q  107 atctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgcc 167  Q
    |||||||||||||| |||| |||  |||||||||| ||||||||||||  || ||||||||    
T  36951535 atctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatcgcc 36951475  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 297
Target Start/End: Complemental strand, 44474727 - 44474520
Alignment:
Q  90 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 189  Q
    |||||||||||||||  || || |||||||| ||||||||  ||||||||||||||| ||||| |  || ||||| ||| ||  ||| |||||  |||||    
T  44474727 gacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaacatcaccattagtccaactcatggtccct 44474628  T
Q  190 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtatcagcgcaattgatcgacaac 289  Q
      ||||||| |||  |  ||||||||| |||||||||||||| || ||||| || || |||||||||||||||||||| | ||| || ||||  ||||||    
T  44474627 cttccatccattttgtcatttttccaatttccgatatagacatccccatttacaaatgtataaactccaaatccatgtctaagcccatttgacagacaac 44474528  T
Q  290 catcaaaa 297  Q
    ||| ||||    
T  44474527 cattaaaa 44474520  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 44474485 - 44474388
Alignment:
Q  56 catccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaacca 153  Q
    |||||| ||||| ||||||||||||||||| | |||||||||||| |   ||| || |||||||| |||||||| |||| |||||||||||| |||||    
T  44474485 catccaatttccctgttttccaatttccagcgtagacatccccatctagagatgtaaaaactccaaatccatgtacaaggccatttgaccaagaacca 44474388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 44474735 - 44474664
Alignment:
Q  319 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacct 390  Q
    ||||||| ||| ||||||||||||||| || |||||||| ||||||||| ||   |||||||||| ||||||    
T  44474735 ccaatgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaacct 44474664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 7045814 - 7045879
Alignment:
Q  319 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaa 384  Q
    ||||||| ||| || |||||||||||| || |||||||||||||||||| ||   |||||||||||    
T  7045814 ccaatgttgacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgaccaa 7045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 7045822 - 7045879
Alignment:
Q  90 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaa 147  Q
    |||||| ||||||||  || || |||||||||||||||||  ||||||||||||||||    
T  7045822 gacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgaccaa 7045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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