View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16512_low_9 (Length: 395)
Name: NF16512_low_9
Description: NF16512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16512_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 6888011 - 6887636
Alignment:
| Q |
6 |
atgaatctcgactacatttgttcttgatgaaccgatatcgatgtctagactgcgtgaatgcgagaaattgttgattgcatggaataaagtgagatagctc |
105 |
Q |
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| T |
6888011 |
atgaatctcgacgacatttgttcttgatgaaccgatatcgatgtctaaactgcgtgaatgcgagaaattgttgattgcatggaataaagtgagatagctc |
6887912 |
T |
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| Q |
106 |
atttccctatccactacttcactgacattctatcagactgaaaataaactaactcaagaaatcactgattgagcttttcacatccgcataaagtcagata |
205 |
Q |
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| T |
6887911 |
atttccctatccactacttcactgacattctatcagacagaaaataaactaactcaagaaatcactgattgagcttttcacatccgcataaagtcagata |
6887812 |
T |
|
| Q |
206 |
catcccaacattgattcccttttcctttgtaattattctatcactcaaatccataagcttcacttcactctttcaccnnnnnnnccgctaccttttcttc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6887811 |
catcccaacattgattcccttttcctttgtaattattctatcactcaaatccataagcttcacttcactctttcacctttttttccgctaccttttcttc |
6887712 |
T |
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| Q |
306 |
tatatcattccaaaacttgccacctactatggaatcaaaacccttttaaaaattggtaaagataatatgctttttg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6887711 |
tatatcattccaaaacttgccacctactatggaatcaaaacccttttaaaaattggtaaagataatatgctttttg |
6887636 |
T |
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