View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_high_16 (Length: 327)
Name: NF16513_high_16
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 33766466 - 33766765
Alignment:
| Q |
18 |
aagacaatcattaaaaggataacctagagaaaaaagaagttgagcaataattttttctatcataatctggatatcttgaatagtaaagagttatttagtc |
117 |
Q |
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| T |
33766466 |
aagataatcattaaaagaataacctatagaaaaaagaagttgagcaataactttttcaatcataatccggatattttgaatagtaaagagctatttagtc |
33766565 |
T |
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| Q |
118 |
cttgacatttttataatggggacaaaatagtctctgatttattataatagaaggattgatttgtctctggtataaaaatgttagggactaattatga--- |
214 |
Q |
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| T |
33766566 |
cttgacatttttataatggggacattatagtctcggattcattataataggaggattgatttgtctccggtataaaaatgttagggactaattatgatat |
33766665 |
T |
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| Q |
215 |
-nnnnnnnnncggggactgaattggtccgtcataaaattatgagggctaaaatggttcttcacgattcaagatatccagattatgctaacaaatcaaatc |
313 |
Q |
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| T |
33766666 |
tattttttttcggggagtgaattggtccgtcataaaattatgagggctaaaatgggtcttcacgattcaagatatccagattatgctaacaaatcaaatc |
33766765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 11098686 - 11098587
Alignment:
| Q |
110 |
atttagtccttgacatttttataatggggacaaaatagtctctg-atttattataatagaaggattgatttgtctctggtataaaaatgttagggactaa |
208 |
Q |
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| T |
11098686 |
atttagtccttgacattttcataatgtggacgaagtagtccctgtattttttataatagaaggactgatttgtccccggtatgaaaatgttagggactaa |
11098587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33766314 - 33766347
Alignment:
| Q |
1 |
ggacatagaagggaaataagacaatcattaaaag |
34 |
Q |
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| T |
33766314 |
ggacatagaagggaaataagacaatcattaaaag |
33766347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 5915912 - 5915983
Alignment:
| Q |
110 |
atttagtccttgacatttttataatgg-ggacaaaatagtctctgatttattataatagaaggattgatttgt |
181 |
Q |
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| T |
5915912 |
atttaatcattgacatttttataatggaggacaaagtagtct-tgatttattgtaatagaatgattgatttgt |
5915983 |
T |
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