View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16513_high_19 (Length: 282)

Name: NF16513_high_19
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16513_high_19
NF16513_high_19
[»] chr1 (2 HSPs)
chr1 (186-275)||(12987761-12987850)
chr1 (39-118)||(12987920-12987999)
[»] chr4 (1 HSPs)
chr4 (186-246)||(6317366-6317426)
[»] chr8 (3 HSPs)
chr8 (186-228)||(5535559-5535601)
chr8 (186-246)||(10650431-10650491)
chr8 (188-247)||(42167030-42167089)
[»] chr7 (2 HSPs)
chr7 (65-118)||(34875345-34875398)
chr7 (211-247)||(10974323-10974359)
[»] chr5 (2 HSPs)
chr5 (186-246)||(15024190-15024250)
chr5 (65-118)||(15024321-15024374)
[»] chr2 (2 HSPs)
chr2 (199-246)||(33134692-33134739)
chr2 (71-115)||(33134560-33134604)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 12987850 - 12987761
Alignment:
Q  186 cttttgtgtgtaggtgcctaaatggtgtgtctaaatgcttgtgcctaagcaagtctttctccatcttcttttcctcttctttatcttcat 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  12987850 cttttgtgtgtgggtgcctaaatggtgtgtctaaatgcttgtgtctaagcaagtctttctccatcttcttttcctcttcttcatcttcat 12987761  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 12987999 - 12987920
Alignment:
Q  39 tactatttaagctaaattgcatttttg-gaaactacttaattgggtacaagggtttgatcatctggtttgaacacacatac 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  12987999 tactatttaagctaaattgcatttttgagaaactacttaattgggtaca-gggtttgatcatctggtttgaacacatatac 12987920  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 6317366 - 6317426
Alignment:
Q  186 cttttgtgtgtaggtgcctaaatggtgtgtctaaatgcttgtgcctaagcaagtctttctc 246  Q
    ||||||||||| |||||||||||| |||||||||||||||||  | |||||||||||||||    
T  6317366 cttttgtgtgtgggtgcctaaatgatgtgtctaaatgcttgtatccaagcaagtctttctc 6317426  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 5535559 - 5535601
Alignment:
Q  186 cttttgtgtgtaggtgcctaaatggtgtgtctaaatgcttgtg 228  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  5535559 cttttgtgtgtgggtgcctaaatgatgtgtctaaatgcttgtg 5535601  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 10650491 - 10650431
Alignment:
Q  186 cttttgtgtgtaggtgcctaaatggtgtgtctaaatgcttgtgcctaagcaagtctttctc 246  Q
    |||||||||||  ||||||||||| ||||| |||| ||||||| | |||||||||||||||    
T  10650491 cttttgtgtgtgagtgcctaaatgatgtgtttaaaagcttgtgtccaagcaagtctttctc 10650431  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 42167030 - 42167089
Alignment:
Q  188 tttgtgtgtaggtgcctaaatggtgtgtctaaatgcttgtgcctaagcaagtctttctcc 247  Q
    |||||||||  |||| |||||| ||||| |||||||||||| ||||| ||||||||||||    
T  42167030 tttgtgtgtgagtgcttaaatgatgtgtttaaatgcttgtgtctaaggaagtctttctcc 42167089  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 34875345 - 34875398
Alignment:
Q  65 ggaaactacttaattgggtacaagggtttgatcatctggtttgaacacacatac 118  Q
    ||||| |||||||||||||| |||||||||| ||  ||||||||||||||||||    
T  34875345 ggaaaatacttaattgggtagaagggtttgagcacttggtttgaacacacatac 34875398  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 10974359 - 10974323
Alignment:
Q  211 tgtgtctaaatgcttgtgcctaagcaagtctttctcc 247  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  10974359 tgtgtctaaatgtttgtgcccaagcaagtctttctcc 10974323  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 15024250 - 15024190
Alignment:
Q  186 cttttgtgtgtaggtgcctaaatggtgtgtctaaatgcttgtgcctaagcaagtctttctc 246  Q
    |||||||||||  ||||||||||| ||||| |||| ||||||| | |||||||||||||||    
T  15024250 cttttgtgtgtgagtgcctaaatgatgtgtttaaaagcttgtgtccaagcaagtctttctc 15024190  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 15024374 - 15024321
Alignment:
Q  65 ggaaactacttaattgggtacaagggtttgatcatctggtttgaacacacatac 118  Q
    ||||| |||||||||||| |||||||||||| ||  |||||||| |||||||||    
T  15024374 ggaaaatacttaattgggcacaagggtttgagcacttggtttgagcacacatac 15024321  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 33134692 - 33134739
Alignment:
Q  199 gtgcctaaatggtgtgtctaaatgcttgtgcctaagcaagtctttctc 246  Q
    |||||||| || |||||||||||| ||||||| |||||||||||||||    
T  33134692 gtgcctaactgatgtgtctaaatgtttgtgcccaagcaagtctttctc 33134739  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 33134560 - 33134604
Alignment:
Q  71 tacttaattgggtacaagggtttgatcatctggtttgaacacaca 115  Q
    |||||||||||| |||||||||||| ||  |||||||||||||||    
T  33134560 tacttaattgggcacaagggtttgaacacatggtttgaacacaca 33134604  T

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