View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_high_2 (Length: 502)
Name: NF16513_high_2
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 10111107 - 10110640
Alignment:
| Q |
1 |
acctagcgatcaggccttcccatcatcgatgtcatgggtgaaaccctgccggaaaccatggtagtttgccggaacgccgtgctagaaaattgtacggcgg |
100 |
Q |
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| T |
10111107 |
acctagcgatcaggccttcccatcattgatgtcatgggtgaaaccctgccggaaaccacggtagtttgccggaacgccgtgctggaaaattgtacggcgg |
10111008 |
T |
|
| Q |
101 |
atactagaaggaaaaccatgcctgttaataggtaaccatattcatgatatatgtatatgcacttccttaaaattacagtgctcaacatagatatgaacga |
200 |
Q |
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| T |
10111007 |
atactagaaggaaaaccatgcctgttaataggtatccatattcatgatatatgtatatgcacttccttaaaattacagtgctcaacatagatatgaacga |
10110908 |
T |
|
| Q |
201 |
catgaatctaggaatttgcacttttttgcaccttgattttctcgttttgtcaagatcctatagactcagaatgttgcttttactatggtgcccatggttt |
300 |
Q |
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| T |
10110907 |
catgaatctaggaatttgcacttttttgcaccttgatgttctcgttttgtcaagatccta-agactcagaatgttgcttttactatggtgcccatggttt |
10110809 |
T |
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| Q |
301 |
ggattttctttttgtcaatatcatttcgaagtttaattgataataaaattttcatgtaagaaattttttacaataataaatgaatgttttagccataatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10110808 |
ggattttctttttgtcaatatcatttcgaagtttaattgataataaaattttcatgtaagaaattttttacaataata----aatgttttagccataatc |
10110713 |
T |
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| Q |
401 |
cccactagtagttttttaatgttccattaatnnnnnnnttatgaaatgattttctcaatgtctttcagattaa |
473 |
Q |
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| T |
10110712 |
cccactagtagttttttaatgttccattaattaaaatattatgaaatgattttctcaatgtctttcggattaa |
10110640 |
T |
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