View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_high_4 (Length: 491)
Name: NF16513_high_4
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 36576591 - 36576712
Alignment:
| Q |
16 |
atttctctaaaaggaagacatgcatcagcatttgtgtaagtcgttaaaaatatgttctagtataacattagtttatcgaagttaaatgtgtg------ta |
109 |
Q |
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| T |
36576591 |
atttctctaaaaggaagacatgcatcagcatttgagtaattcgttaaaaa-atgtacta-tataacattagtttatcgaagttaaatgtgtgtaatacta |
36576688 |
T |
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| Q |
110 |
ataatgtataattgtttgaaaagg |
133 |
Q |
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| T |
36576689 |
ataatgtataattgtttgaaaagg |
36576712 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 36576798 - 36576877
Alignment:
| Q |
171 |
gaatgaggcattggttggctagaggagggtggtcaggattgatttgagtggtcgatacagatttgggtttacatgaaacag |
251 |
Q |
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| T |
36576798 |
gaatgaggcattggttggctagaggagggtggtcaaggttgatttgggtggt-ggcacagactagggtttacatgaaacag |
36576877 |
T |
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