View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_13 (Length: 407)
Name: NF16513_low_13
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 29725423 - 29725062
Alignment:
| Q |
18 |
aattccaacttattttggcagtaagctatagtggaaaatatgatttagtccaagcatgcaaaagtgtagcccaaaaagtgcaagatggcattattcattt |
117 |
Q |
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| T |
29725423 |
aattccaacttattttggcagtaagctatagtggaaaatatgatttagtccaagcatgcaaaagtgtagcccaaaaagtgcaagatggcattattcattt |
29725324 |
T |
|
| Q |
118 |
ggaagacataaatgaaaatattattgaaaaggaattagaaactaattgtacagaatttccttacccagatttactaatacggatcagtggagaacttaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
29725323 |
ggaagacataaatgaaaatattattgaaaaggaattagaaactaattgtacagaatttccttatccagatttactaatacggaccagtggagaacttaga |
29725224 |
T |
|
| Q |
218 |
gttagtaatttcttgttatggcaattggcatatacagaacttttctttaatagaaaactttggcctgattttgggaaggatgagtttatagaggccttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29725223 |
gttagtaatttcttgttatggcaattggcatatacagaacttttctttaatagaaaactttggcctgattttgggaaggatgagtttatagaggccttaa |
29725124 |
T |
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| Q |
318 |
cttcatttcaaaatagacagagacgttatggtggacgatattaatcaaccaaatacttttga |
379 |
Q |
| |
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| T |
29725123 |
cttcatttcaaaatagacagagacgttatggtggacgatattaatcaaccaaatacttttga |
29725062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 29729219 - 29728878
Alignment:
| Q |
21 |
tccaacttattttggcagtaagctatagtggaaaatatgatttagtccaagcatgcaaaagtgtagcccaaaaagtgcaagatggcattattcatttgga |
120 |
Q |
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| T |
29729219 |
tccaacttattgcggcaattaactatggtgggaaatatgatgtagtccaagcatgtaaaagtgtggccaagaaagttcaagatggttctcttcatttaga |
29729120 |
T |
|
| Q |
121 |
agacataaatgaaaatattattgaaaaggaattagaaactaattgtacagaatttccttacccagatttactaatacggatcagtggagaacttagagtt |
220 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||| || || || |||||| |||| ||| |||||||||||| |||||||||||||||||| |
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| T |
29729119 |
agacattgatgaaaacattattgaaaaggaattggaaactaagtgcactgagtttcctaacccggatctactaatacggactagtggagaacttagagtt |
29729020 |
T |
|
| Q |
221 |
agtaatttcttgttatggcaattggcatatacagaacttttctttaatagaaaactttggcctgattttgggaaggatgagtttatagaggccttaactt |
320 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||||| || |
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| T |
29729019 |
agtaatttcatgttatggcaattggcatatgcagaacttttctttaatcaaaaactttggccagattttggaaaggatgaatttgtagaggccttaagtt |
29728920 |
T |
|
| Q |
321 |
catttcaaaatagacagagacgttatggtggacgatattaat |
362 |
Q |
| |
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|||||||| ||||| |||||||||||||||||| |||||| |
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| T |
29728919 |
tctttcaaaagagacaaagacgttatggtggacgacattaat |
29728878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 29743580 - 29743256
Alignment:
| Q |
21 |
tccaacttattttggcagtaagctatagtggaaaatatgatttagtccaagcatgcaaaagtgtagcccaaaaagtgcaagatggcattattcatttgga |
120 |
Q |
| |
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|||| |||||| ||||| | | |||| |||||| ||||||| ||||||||||||| || |||||| | | |||||||||||| | |||||||||||||| |
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| T |
29743580 |
tccatcttattgtggcaattaactatggtggaagatatgatgtagtccaagcatgtaagagtgtaactaagaaagtgcaagatagaattattcatttgga |
29743481 |
T |
|
| Q |
121 |
agacataaatgaaaatattattgaaaaggaattagaaactaattgtacagaatttccttacccagatttactaatacggatcagtggagaacttagagtt |
220 |
Q |
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|||||| ||||||| |||||| |||| || || || ||||| |||| || ||||||||||| ||| ||||||| |||| | |||||||||| ||||| |
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| T |
29743480 |
agacattgatgaaaacattattaaaaatgatttggagactaaatgtatcgagtttccttaccctgatctactaatccggaccggtggagaactacgagtt |
29743381 |
T |
|
| Q |
221 |
agtaatttcttgttatggcaattggcatatacagaacttttctttaatagaaaactttggcctgattttgggaaggatgagtttatagaggccttaactt |
320 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||| | |||||||||| || |
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| T |
29743380 |
agcaacttcttgttatggcaattggcatatacagaacttttctttaatcgaaaactttggcctgattttgagaaaaatgattttgttgaggccttaagtt |
29743281 |
T |
|
| Q |
321 |
catttcaaaatagacagagacgtta |
345 |
Q |
| |
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|||||||| | ||| | |||||||| |
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| T |
29743280 |
catttcaacagagagaaagacgtta |
29743256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 33862723 - 33862907
Alignment:
| Q |
112 |
tcatttggaagacataaatgaaaatattattgaaaaggaattagaaactaattgtacagaatttccttacccagatttactaatacggatcagtggagaa |
211 |
Q |
| |
|
|||||| |||||||| ||||||| |||| |||||||||| |||||| ||||||| || ||||||||||| ||||||||||| | || ||||||||| |
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| T |
33862723 |
tcatttagaagacattgatgaaaactgtattcaaaaggaattggaaactgattgtaccgagtttccttacccggatttactaatccagacaagtggagaa |
33862822 |
T |
|
| Q |
212 |
cttagagttagtaatttcttgttatggcaattggcatatacagaacttttctttaatagaaaactttggcctgattttgggaagg |
296 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |||||| ||| ||||||||| || | |||||||||||| |||||||||||| |
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| T |
33862823 |
cttagagttggtaatttcttgttatggaaatttgcatattcagtacttttcttcaacaaaaaactttggccaaattttgggaagg |
33862907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 298
Target Start/End: Original strand, 29132826 - 29133012
Alignment:
| Q |
112 |
tcatttggaagacataaatgaaaatattattgaaaaggaattagaaactaattgtacagaatttccttacccagatttactaatacggatcagtggagaa |
211 |
Q |
| |
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|||||| |||||||| ||||||| |||| ||||| |||| |||||||||||||| || |||||||||| ||||||||||| | || ||||||||| |
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| T |
29132826 |
tcatttagaagacattgatgaaaactgtattcaaaagaaattggaaactaattgtaccgagtttccttaccaggatttactaatccagacaagtggagaa |
29132925 |
T |
|
| Q |
212 |
cttagagttagtaatttcttgttatggcaattggcatatacagaacttttctttaatagaaaactttggcctgattttgggaaggat |
298 |
Q |
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||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| |||| |||| || |||||| |||||||| |
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| T |
29132926 |
cttagagttagtaatttcttgttatggaaattttcatattcagaacttttccttaatcaaaaattttgaccagatttttggaaggat |
29133012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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