View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_14 (Length: 407)
Name: NF16513_low_14
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 129 - 369
Target Start/End: Original strand, 4599070 - 4599310
Alignment:
| Q |
129 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggaca |
228 |
Q |
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| T |
4599070 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggaca |
4599169 |
T |
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| Q |
229 |
aacatataaccaagtcgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacaccatagaagtttccatcaaataatata |
328 |
Q |
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| T |
4599170 |
aacatataaccaagttgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacatcatagaagtttccatcaaataatata |
4599269 |
T |
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| Q |
329 |
taacaataatctcaagagagtcctactcacccatgctccaa |
369 |
Q |
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| T |
4599270 |
taacaataattgcaagagagtcttactcacccttggtccaa |
4599310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 129 - 269
Target Start/End: Original strand, 4623497 - 4623637
Alignment:
| Q |
129 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggaca |
228 |
Q |
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| T |
4623497 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaataccctttggaca |
4623596 |
T |
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| Q |
229 |
aacatataaccaagtcgcagcctgcacatattgtttagtta |
269 |
Q |
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| T |
4623597 |
aacatataaccaagttgcagcctgcacatattgtttagtta |
4623637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4623402 - 4623485
Alignment:
| Q |
1 |
tcattgacttcattcatacctatgatttaaatttattagaattttcaaattttagtttgttagacactgaaaaaaggataatga |
84 |
Q |
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| T |
4623402 |
tcattgacttcattcatacctatgatttaaatttattagaattttcaaattttagtttattagacactgaaaaaaggataatga |
4623485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 4623649 - 4623731
Alignment:
| Q |
316 |
atcaaataatatataacaataatctcaagagagtcctactcacccatgctccaatgtatgtcccatctttattcatctctgtc |
398 |
Q |
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| T |
4623649 |
atcaaataagatgtaacaataatctcaagagagtcttactcacccatgctccaatgtatgtcccatctttattcttatctgtc |
4623731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 25016383 - 25016481
Alignment:
| Q |
144 |
tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag |
242 |
Q |
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| T |
25016383 |
tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaatcccccttggataaacaaatagccaag |
25016481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 25037649 - 25037744
Alignment:
| Q |
147 |
taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag |
242 |
Q |
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| T |
25037649 |
taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaatcccccttggataaacaaatagccaag |
25037744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 4598911 - 4598947
Alignment:
| Q |
13 |
ttcatacctatgatttaaatttattagaattttcaaa |
49 |
Q |
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| T |
4598911 |
ttcatacctatgatttaaatttattagaattttcaaa |
4598947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 18805481 - 18805377
Alignment:
| Q |
137 |
atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatata |
236 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
18805481 |
atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaatcccctttggataaacatata |
18805382 |
T |
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| Q |
237 |
accaa |
241 |
Q |
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|||| |
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| T |
18805381 |
gccaa |
18805377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 18805584 - 18805534
Alignment:
| Q |
18 |
acctatgatttaaatttattagaattttcaaattttagtttgttagacact |
68 |
Q |
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| T |
18805584 |
acctatgatttaaatttattagagttttcaaattttagtttataagacact |
18805534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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