View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16513_low_16 (Length: 367)
Name: NF16513_low_16
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_16 |
 | |
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| [»] chr3 (36 HSPs) |
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|
| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5298309 - 5298675
Alignment:
| Q |
1 |
ctctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5298309 |
ctctattctcaaacaaaattctcccgacactgattttgctaaatcgttgacaagatcatgcataacaaagtacctgtaatcaacatatcctgatcgttga |
5298408 |
T |
|
| Q |
101 |
aaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298409 |
aaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttatcaattctgcagcacttcaacaaaccttctgccatccaaa |
5298508 |
T |
|
| Q |
201 |
gcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298509 |
gcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
5298608 |
T |
|
| Q |
301 |
cctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298609 |
cctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
5298675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 101 - 364
Target Start/End: Complemental strand, 4389294 - 4389031
Alignment:
| Q |
101 |
aaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||||||||||||| |||||||| ||| ||| |||||||||||||| || || ||||||| |
|
|
| T |
4389294 |
aaaaatgaaattgattctagatcaacaaataactcattacccaactcttcttcacttttgtcacttccgcaacacttcaacaaaccatccgctatccaaa |
4389195 |
T |
|
| Q |
201 |
gcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
300 |
Q |
| |
|
|||||||||||||| |||| |||||| | |||| | ||||||||||||||||||||||||||||| || ||| | ||||||||||||||| ||||||| |
|
|
| T |
4389194 |
gcttgattaattcacgcttgtcaaaaatgtgacctttgggaaatatggaacaataagaaaaacaacgtttaagaatggaagggagatgatggtaactcaa |
4389095 |
T |
|
| Q |
301 |
cctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatc |
364 |
Q |
| |
|
|||| ||||| ||||||||| | ||||| ||||||||| ||||| ||| |||||||||||| |
|
|
| T |
4389094 |
tctcagtactgaattaatgttattgtcaccttctgataaatgccacatatcggtctccaatatc |
4389031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 5249763 - 5250113
Alignment:
| Q |
14 |
caaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttgaaaaaatgaaactg |
113 |
Q |
| |
|
||||| |||||| || |||||||||||||||||| |||||||||||||| ||||| | | ||| | | ||| | |||| | || |||||||||| || |
|
|
| T |
5249763 |
caaaactctcctaccattgattttgctaaatcgttgacaagatcatgcattacaaacttc--gtact-accatctgttgattgctggaaaaatgaaattg |
5249859 |
T |
|
| Q |
114 |
attctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattc |
213 |
Q |
| |
|
|| ||||||| | || ||||||||||| || |||| |||| |||||||||||| |||||||| ||||||||| ||||| |||||||| || || ||| |
|
|
| T |
5249860 |
atactagatcaacgaataattcattaccgaaatcttgttcacttttgtcaattccgcagcactgcaacaaaccatctgctgcccaaagctggactagttc |
5249959 |
T |
|
| Q |
214 |
agccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgag |
313 |
Q |
| |
|
| |||| | |||| | |||||| | ||||||||||||||||||||||| |||||||| ||| | ||||||||| |||| ||||||| |||| ||||| |
|
|
| T |
5249960 |
accctttccaaaactgtaacctttaggaaatatggaacaataagaaaagcaacgcttaagaatagaagggagacaatggtaactcaatctcagtactgaa |
5250059 |
T |
|
| Q |
314 |
ttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5250060 |
ttaatgttactctcgccctctgataaacgccacatatctgtctccaatatctta |
5250113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 367
Target Start/End: Original strand, 5267635 - 5268000
Alignment:
| Q |
2 |
tctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttgaa |
101 |
Q |
| |
|
||||||| ||| ||||||||||||| || ||||| ||||||||| || | |||||| ||||| || ||| | |||| |||||| |||| | || | |
|
|
| T |
5267635 |
tctattcgcaagcaaaattctcctgccattgattgtgctaaatcattgataagatcgtgcattgtgaaccgcttattatcaccatatcttgattgctgga |
5267734 |
T |
|
| Q |
102 |
aaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaag |
201 |
Q |
| |
|
||||||||| ||| ||||||| || || |||| |||||||| ||||||||| |||| || ||| || |||||||| |||||| || ||||||||||| |
|
|
| T |
5267735 |
aaaatgaaattgacactagatcatctaataattgattacccagctcttcttcgcttttttctgttccgcggcacttcagcaaaccgtcggccatccaaag |
5267834 |
T |
|
| Q |
202 |
cttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaac |
301 |
Q |
| |
|
|||||||||||| | ||| ||| | ||| | ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
5267835 |
tttgattaattcacctttgtcaaaccacttgcctttgggaaataaggaacaataagaaaaacagcgcttcagattggaagggagatgatggtaactcaat |
5267934 |
T |
|
| Q |
302 |
ctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
|||| ||||| ||||||||| | ||||| |||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5267935 |
ctcagtactgaattaatgttaatgtcaccttctgataaacgccacatatctgtctccaatatctta |
5268000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 96 - 367
Target Start/End: Original strand, 7587545 - 7587816
Alignment:
| Q |
96 |
gttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccat |
195 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||||||||||||||||||||||||| ||||||| ||| ||| || |||| ||||||||||||||| |
|
|
| T |
7587545 |
gttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccat |
7587644 |
T |
|
| Q |
196 |
ccaaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaa |
295 |
Q |
| |
|
|||||||||||| |||||| | || ||| | |||||| | |||||||| |||||| | | |||||||||||| ||||| || ||||||| |||| || |
|
|
| T |
7587645 |
ccaaagcttgatcaattcatctttttcaaatacataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggatgggagattatggtaa |
7587744 |
T |
|
| Q |
296 |
ctcaacctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
||||| ||||| ||||||||||| | | |||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
7587745 |
ctcaatctcaatactgagttaatttcatcaccacccttcgatacatgccacatatctgtctccaatatctta |
7587816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 125 - 365
Target Start/End: Complemental strand, 6722396 - 6722156
Alignment:
| Q |
125 |
tcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaa |
224 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| ||| ||| |||||||||||| |||||| |||||||||||| |||| |||| ||| || |
|
|
| T |
6722396 |
tcaaagaattcattacccaactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatccaaagcttaattagttcactcttctcaa |
6722297 |
T |
|
| Q |
225 |
aaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaatgttact |
324 |
Q |
| |
|
| ||| || | |||||||| |||||||||| ||||||||||||||||| |||||||| | | ||||||||| || | || | ||||||||| | |
|
|
| T |
6722296 |
actcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaagaaactcaatcttagtacggggttaatgttgtt |
6722197 |
T |
|
| Q |
325 |
ctcaccctctgataaacaccacagatctgtctccaatatct |
365 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
6722196 |
ctcaccctctgataaacaccacaaatcagtctccaatatct |
6722156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 8589319 - 8589670
Alignment:
| Q |
13 |
acaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttgaaaaaatgaaact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| || |||| ||| | |||||||| |||||||||| | |
|
|
| T |
8589319 |
acaaaattctcctgacactgattttgctaaatcattgacaagatcatgcatggcatagtggttccaatcctcattt---gatcgttggaaaaatgaaatt |
8589415 |
T |
|
| Q |
113 |
gattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaatt |
212 |
Q |
| |
|
|| || ||||| | || | ||||||||| |||||||||||| |||||| || ||| |||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
8589416 |
gactcaagatcaccgaaaatttcattacctaactcttcttcacttttgtgtgatccgcaacacttcaataaaccttctgccatccagagcttgatcaatt |
8589515 |
T |
|
| Q |
213 |
cagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactga |
312 |
Q |
| |
|
|| | || ||| |||||| | ||||| ||||||||||||||||| ||| |||| ||| | |||||||||| |||| |||| || |||| |||||| |
|
|
| T |
8589516 |
cacctttttcaaattcataacccttgggaaaaatggaacaataagaaaagcaatgctttagaatggaagggagattatggtaacttaatctcagaactga |
8589615 |
T |
|
| Q |
313 |
gttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
||| ||| | || || |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
8589616 |
gtttatgctgtgttccccatctgataaacgccacatattagtctccaatatctta |
8589670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 90 - 285
Target Start/End: Original strand, 6168583 - 6168778
Alignment:
| Q |
90 |
ctgatcgttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttc |
189 |
Q |
| |
|
||||| |||| |||||||| | ||| |||||| |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||| | |||||||| |
|
|
| T |
6168583 |
ctgattgttggaaaaatgacattgacactagatgatcaaagaattcattacccaactcttcttcatttttgtcttttccgcaacactttagcaaaccttg |
6168682 |
T |
|
| Q |
190 |
tgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggag |
285 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| ||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
6168683 |
tgccatccaaagcttgattaatccatccttttcaaacttataacccttgggaaatatagaacaatatgcaaaacaatgcttcagatttgaagggag |
6168778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 363
Target Start/End: Complemental strand, 8569299 - 8569037
Alignment:
| Q |
101 |
aaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaa |
200 |
Q |
| |
|
|||||||||| || || ||||| || ||||| |||||||||| |||||||||| ||||||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
8569299 |
aaaaatgaaatggactccagatcatcgaagaactcattacccagctcttcttcacttttgtctcttttgcaacacttcaacaaaccttctgccatccaaa |
8569200 |
T |
|
| Q |
201 |
gcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
300 |
Q |
| |
|
||||||| |||||| | || ||| |||||| | ||||| || |||||||| | |||||||||||| ||||| |||||||||| |||| ||||||| |
|
|
| T |
8569199 |
gcttgatcaattcatctttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaa |
8569100 |
T |
|
| Q |
301 |
cctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatat |
363 |
Q |
| |
|
||||| |||| |||||| | | ||||||| |||||| ||||| ||| ||||||||||| |
|
|
| T |
8569099 |
tctcaatactgggttaatttcatcgtcacccttcgataaatgccacatatcagtctccaatat |
8569037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 6916793 - 6916990
Alignment:
| Q |
90 |
ctgatcgttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttc |
189 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||| | || |||||||||||||||||||||||| ||||||| ||| || ||||||| ||||||||| |
|
|
| T |
6916793 |
ctgatcgttggaaaaatgatattgacactagatcattgaaaaattcattacccaactcttcttcacttttgtctcttccacaacacttcagcaaaccttc |
6916892 |
T |
|
| Q |
190 |
tgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagat |
287 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||| || | |||||||||||||| |||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
6916893 |
tgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatggaacagtaagcaaaacaatgcttcagatttgaagagagat |
6916990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 6735568 - 6735931
Alignment:
| Q |
1 |
ctctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||| ||| || || | || | |||| |||| |
|
|
| T |
6735568 |
ctctatttgcaaacaaaattctcctgacactgattttgttaaatcattgacaagatcatgcatgacatagtgctcatatggatcaaa---tgattgttgg |
6735664 |
T |
|
| Q |
101 |
aaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaa |
200 |
Q |
| |
|
|||||||||| ||| || ||||| | || | |||||| || |||||||||||| ||||||| || ||| ||||||| |||||||||||||||||||| |
|
|
| T |
6735665 |
aaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaa |
6735764 |
T |
|
| Q |
201 |
gcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
300 |
Q |
| |
|
||||||| ||| | | || ||| ||||||| | || || ||||||||||| | ||| |||||||| |||| ||| ||||||| |||| ||||||| |
|
|
| T |
6735765 |
gcttgatcaatacttcttttttaaatctataacccttggggaaaatggaacaataggcaaagcaacgctttagatctgatgggagattatggtaactcaa |
6735864 |
T |
|
| Q |
301 |
cctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
|| | |||||||||||||| || || |||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
6735865 |
tcttagtactgagttaatgttgtggtccccatctgataaacgccacatatcagtctccaatatctta |
6735931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 330
Target Start/End: Original strand, 8471257 - 8471468
Alignment:
| Q |
119 |
agatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagcct |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||||||| ||||||| || |||| ||||||||||||||||||||||||||| |||||| || |
|
|
| T |
8471257 |
agatcatcaaagaattcattacccaactcttcctcacttttgtctcttctgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatccc |
8471356 |
T |
|
| Q |
219 |
tgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaat |
318 |
Q |
| |
|
|| ||| | |||| | |||||||| || || || | |||||| ||||||||||| |||||||| | |||| ||||||| ||||| | |||||||| |
|
|
| T |
8471357 |
tgtcaaactcaaaacccttaggaaatatagagcagtaggcaaaacagcgcttcagattagaagggaggttatggtaactcaatctcaatgccgagttaat |
8471456 |
T |
|
| Q |
319 |
gttactctcacc |
330 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
8471457 |
gttactgtcacc |
8471468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 117 - 367
Target Start/End: Original strand, 6899807 - 6900057
Alignment:
| Q |
117 |
ctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
6899807 |
ctagatcgttgaagaattcattacccaactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacc |
6899906 |
T |
|
| Q |
217 |
cttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagtta |
316 |
Q |
| |
|
||| ||| ||| || ||||||||| ||||||||| ||||||| |||||||||| |||||||| | | || ||||||| |||| | | |||| |
|
|
| T |
6899907 |
cttctcaaactcatagccctttggaaataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactcaatttcaataaagggtta |
6900006 |
T |
|
| Q |
317 |
atgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
||||| | | |||||||| ||||| ||| | ||| |||||||| |||||| |
|
|
| T |
6900007 |
atgttgttattaccctctggtaaacgccagaaatcagtctccaacatctta |
6900057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 133 - 365
Target Start/End: Complemental strand, 6520484 - 6520252
Alignment:
| Q |
133 |
ttcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataa |
232 |
Q |
| |
|
||||||||| || ||||||||| ||||||| | || | | ||||||||||||||||||||||||||||||||||| |||| | | || ||| ||||| |
|
|
| T |
6520484 |
ttcattaccaaaatcttcttcacttttgtccaatccgtaacacttcaacaaaccttctgccatccaaagcttgatcaatttatcttttttaaatttataa |
6520385 |
T |
|
| Q |
233 |
cctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaatgttactctcaccct |
332 |
Q |
| |
|
|| | ||||| || |||||||| | |||||||||||| ||||| |||||||||| |||| ||||||| ||||| |||||||||||| | || | | |
|
|
| T |
6520384 |
cccttgggaaaaatagaacaatatgcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaatggtgtggtctctgt |
6520285 |
T |
|
| Q |
333 |
ctgataaacaccacagatctgtctccaatatct |
365 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
6520284 |
ctgataaacgccacatatcagtctccaatatct |
6520252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 305
Target Start/End: Original strand, 6946976 - 6947148
Alignment:
| Q |
133 |
ttcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataa |
232 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| | || ||| ||||| |
|
|
| T |
6946976 |
ttcattacctaactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataa |
6947075 |
T |
|
| Q |
233 |
cctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctca |
305 |
Q |
| |
|
|| | ||||| ||||| ||||| | ||||||||||||| |||| ||||| |||| ||| ||||||| |||| |
|
|
| T |
6947076 |
cccttgggaaaaatggagcaataggcaaaacaacgcttccgattggaaggaagattgtggtaactcaatctca |
6947148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 6449238 - 6448876
Alignment:
| Q |
13 |
acaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtact----tgtaatcaacatatcct-----gatcgttgaaaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || |||||||||||||| ||| |||||| |||| || || || | ||| |||| ||| |
|
|
| T |
6449238 |
acaaaattctcctgacactgattttgttaaatcattcacaagatcatgcatgacatagtactcatatgtaccaaatatttcatcaaatgattgttggaaa |
6449139 |
T |
|
| Q |
104 |
aatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagct |
203 |
Q |
| |
|
||||||| ||| || ||||| || | ||||||||| |||||||||||| ||||||| || ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
6449138 |
aatgaaattgactcaagatcacagaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcaacataccttctgccatccaaagct |
6449039 |
T |
|
| Q |
204 |
tgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacct |
303 |
Q |
| |
|
|||| |||||| |||| ||| ||||||| | || || ||||| ||||| | ||| |||| ||| ||| | |||||||||| |||| ||||||| || |
|
|
| T |
6449038 |
tgatcaattcatcctttttaaatctataacccttagggaaaatggagcaataggcaaagcaacactttagactggaagggagattatggtaactcaatct |
6448939 |
T |
|
| Q |
304 |
caaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctt |
366 |
Q |
| |
|
|| |||||||||||| | || | |||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
6448938 |
cagtactgagttaatggaatggtctctgtctgataaacgccacatatcagtctccaatatctt |
6448876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 6554877 - 6554526
Alignment:
| Q |
13 |
acaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttgaaaaaatgaaact |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || |||||||||||||| | ||| || || | || || ||||| || |||||||||| | |
|
|
| T |
6554877 |
acaaaattctcctgacactgattttgttaaatcattgacaagatcatgcatgcaatagtcctcatatgtaccaaat---gatcgctggaaaaatgaaatt |
6554781 |
T |
|
| Q |
113 |
gattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaatt |
212 |
Q |
| |
|
|| || ||||| | || | ||||||||| |||||||||||| ||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
6554780 |
gactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaagcttgatcaata |
6554681 |
T |
|
| Q |
213 |
cagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactga |
312 |
Q |
| |
|
| | || ||| |||| || | || || ||||||||||| | ||| |||||||| |||| |||||||||| |||| ||||||| || | ||||| |
|
|
| T |
6554680 |
cttctttttcaaatctatagcccttggggaaaatggaacaatacgcaaagcaacgctttagatccgaagggagattatggtaactcaatcttagtactga |
6554581 |
T |
|
| Q |
313 |
gttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
||||||||| || || |||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
6554580 |
gttaatgttgtggtccccatctgataaacgccacatatcagtctccaatatctta |
6554526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 285
Target Start/End: Original strand, 7749732 - 7749889
Alignment:
| Q |
128 |
aagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaa |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| || ||||| | ||| |||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
7749732 |
aagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaact |
7749831 |
T |
|
| Q |
228 |
tataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggag |
285 |
Q |
| |
|
||| || |||||||||| |||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
7749832 |
catagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggag |
7749889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 317
Target Start/End: Original strand, 8454361 - 8454545
Alignment:
| Q |
133 |
ttcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataa |
232 |
Q |
| |
|
||||||||| |||||||||||| || ||| | || ||| |||||||||||||||||||||||||||||| |||| | |||| | || ||| ||| | |
|
|
| T |
8454361 |
ttcattaccaaactcttcttcacttctgttagatccgcaacacttcaacaaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatga |
8454460 |
T |
|
| Q |
233 |
cctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaa |
317 |
Q |
| |
|
|| | ||||| ||||||||||| ||||| |||||||| ||||| |||||||||| |||| ||||||| |||| |||||||||| |
|
|
| T |
8454461 |
cccttgggaaaaatggaacaataggaaaagcaacgctttagattagaagggagattatggtaactcaatctcagtactgagttaa |
8454545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 366
Target Start/End: Complemental strand, 6591652 - 6591417
Alignment:
| Q |
128 |
aagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaa |
227 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||| || || ||||| | ||| |||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
6591652 |
aagaattcattgcccaacttttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaact |
6591553 |
T |
|
| Q |
228 |
tataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaatgttactctc |
327 |
Q |
| |
|
||| || | |||||||| |||||||||| |||||||||||||||||| || ||||| | | || ||||||| |||| || | ||||||| || || |
|
|
| T |
6591552 |
catagcccttgggaaatatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctcagtacggggttaatg---ctgtc |
6591456 |
T |
|
| Q |
328 |
accctctgataaacaccacagatctgtctccaatatctt |
366 |
Q |
| |
|
||| ||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
6591455 |
accatctgataaatgccacatatcagtctccaatatctt |
6591417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 330
Target Start/End: Complemental strand, 6839229 - 6839029
Alignment:
| Q |
130 |
gaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaata |
229 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||| ||| |||| | |||| ||||||||||||||||||||||||||| |||||| || || ||| | |
|
|
| T |
6839229 |
gaattcatttcccaattcttcttcacttttgtctcttccgcagtatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactca |
6839130 |
T |
|
| Q |
230 |
taacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaatgttactctcac |
329 |
Q |
| |
|
|||| || ||||||| ||||| || | |||||| || |||| | | |||||||| | |||| ||||||| |||||| | |||||||||||||| |||| |
|
|
| T |
6839129 |
aaacccctaggaaatacagaacagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaagccgagttaatgttactatcac |
6839030 |
T |
|
| Q |
330 |
c |
330 |
Q |
| |
|
| |
|
|
| T |
6839029 |
c |
6839029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 364
Target Start/End: Original strand, 6142064 - 6142252
Alignment:
| Q |
176 |
ttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagat |
275 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| || | |||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
6142064 |
ttcaagaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaatgcttcagat |
6142163 |
T |
|
| Q |
276 |
ttgaagggagatgatggaaactcaacctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatc |
364 |
Q |
| |
|
|||||||| | || |||| | |||| ||| || |||||||| | |||||||||| ||||| ||||| ||| |||||||||||| |
|
|
| T |
6142164 |
cagaagggaggctaaggtaactgattctcagaacggaattaatgtttccgtcaccctctggtaaacgccacaaatcagtctccaatatc |
6142252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 6480346 - 6480223
Alignment:
| Q |
91 |
tgatcgttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttct |
190 |
Q |
| |
|
|||| |||| |||||||||| ||| || ||||| | || | ||||||||| |||||||||||| |||||| || ||| |||||||||||||||||| |
|
|
| T |
6480346 |
tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtatgatccgcaacacttcaacaaaccttct |
6480247 |
T |
|
| Q |
191 |
gccatccaaagcttgattaattca |
214 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
6480246 |
gccatccaaagcttgatcaattca |
6480223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 285
Target Start/End: Original strand, 6882234 - 6882391
Alignment:
| Q |
128 |
aagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaa |
227 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||| || || ||||||||||||||||||||||||||||| || |||| |||| |||| || |
|
|
| T |
6882234 |
aagaattcattacctaactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagct |
6882333 |
T |
|
| Q |
228 |
tataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggag |
285 |
Q |
| |
|
||| || | |||||||| |||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6882334 |
catagcccttgggaaatatagaacaataagcaaaacaacgcttcagattggaagggag |
6882391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 6258979 - 6259083
Alignment:
| Q |
181 |
caaaccttctgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaa |
280 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| ||| |||||| | |||||||| |||||||||| ||||||| |||||||||| ||| |
|
|
| T |
6258979 |
caaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa |
6259078 |
T |
|
| Q |
281 |
gggag |
285 |
Q |
| |
|
||||| |
|
|
| T |
6259079 |
gggag |
6259083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6916708 - 6916763
Alignment:
| Q |
17 |
aattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagta |
72 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
6916708 |
aattctcccgacactgattttgctaaatcattgacaagatcatgcatgacaaagta |
6916763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 6520616 - 6520558
Alignment:
| Q |
13 |
acaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagt |
71 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||| ||| ||| |
|
|
| T |
6520616 |
acaaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagt |
6520558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 6591775 - 6591729
Alignment:
| Q |
17 |
aattctcctgacactgattttgctaaatcgttaacaagatcatgcat |
63 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6591775 |
aattctcctgacactgattttgctaaatcattgacaagatcatgcat |
6591729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 6722507 - 6722455
Alignment:
| Q |
11 |
aaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcat |
63 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
6722507 |
aaacagaattctcctgacactgaattggctaaatcattaacaagatcatgcat |
6722455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 6480433 - 6480390
Alignment:
| Q |
13 |
acaaaattctcctgacactgattttgctaaatcgttaacaagat |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
6480433 |
acaaaattctcctgacactgattttgctaaatcattgacaagat |
6480390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5280244 - 5280306
Alignment:
| Q |
1 |
ctctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcat |
63 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
5280244 |
ctctattcgtaaagaaaattctcctgacactgatcttgctaaatcaatgacaagatcatgcat |
5280306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 6265421 - 6265507
Alignment:
| Q |
128 |
aagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattca |
214 |
Q |
| |
|
||||||||||| || |||||||||| |||||| ||| ||| || || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6265421 |
aagaattcattccctaactcttctttgcttttgtttcttccgcaacaatttaacaaaccttctgccatccaaagcctgattaattca |
6265507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 6946865 - 6946915
Alignment:
| Q |
13 |
acaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcat |
63 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| || |||||||||||||| |
|
|
| T |
6946865 |
acaaaattctcctgacactgatttggataaatcattgacaagatcatgcat |
6946915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 6265301 - 6265353
Alignment:
| Q |
20 |
tctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagta |
72 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||||||||| | |||||| |
|
|
| T |
6265301 |
tctcctgacactgatttcgctaaatcattgacaagatcatgcatgataaagta |
6265353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7749593 - 7749649
Alignment:
| Q |
1 |
ctctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatc |
57 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
7749593 |
ctctattcttaagcagaattctcccgacactgattttgctaaatcattgacaagatc |
7749649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6899679 - 6899741
Alignment:
| Q |
1 |
ctctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcat |
63 |
Q |
| |
|
||||||||| || | |||||||||||||||| |||| |||||||| | |||||||||||||| |
|
|
| T |
6899679 |
ctctattcttaagcgaaattctcctgacactaatttcgctaaatcatatacaagatcatgcat |
6899741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 25242586 - 25242288
Alignment:
| Q |
4 |
tattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaa-gtacttgtaatcaacatatcctgatcgttgaaa |
102 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||| || |||||||||||| ||||||| |||||| ||||||| | || ||||||| || |
|
|
| T |
25242586 |
tattctcaaataaaattctcccgacactgattttgctaaatcattgacaagatcatgcttaacaaaagtacttaaaatcaactggttctaatcgttggaa |
25242487 |
T |
|
| Q |
103 |
aaatgaaactgattctag-atcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaag |
201 |
Q |
| |
|
|||||||| || |||| ||| || || || || ||||||||||||||||| |||||| |||| || ||||||| ||| |||| ||| |||||||| |
|
|
| T |
25242486 |
aaatgaaatcgactctattatcatcgaataactctctacccaactcttcttcacttttgtttgttctacaacacttcagcaagccttatgctatccaaag |
25242387 |
T |
|
| Q |
202 |
cttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
300 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| | |||||||||||||| ||| |||||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
25242386 |
cttgattaattcacccttgcaaaaagcataacctttaggaaatatggaacagtaactaaaacaacgcttcagattggaagggagattatggtaactcaa |
25242288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 318
Target Start/End: Complemental strand, 6573660 - 6573432
Alignment:
| Q |
90 |
ctgatcgttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttc |
189 |
Q |
| |
|
||||| |||| |||||||||| || |||||||| || |||||||||||||||||||||| |||| ||||||| ||| ||| || |||| ||||||||| |
|
|
| T |
6573660 |
ctgattgttggaaaaatgaaatggactctagatcatccaagaattcattacccaactcttgttcacttttgtctcttccgcaacatttcagcaaaccttc |
6573561 |
T |
|
| Q |
190 |
tgccatccaaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatga |
289 |
Q |
| |
|
||||||||||| ||||| |||||| | || ||| ||||||| | ||||||||||||||||| | |||||||||||| ||||| |||||||||| | |
|
|
| T |
6573560 |
agccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaaatatggaacaatatgcaaaacaacgctttagattggaagggagatta |
6573461 |
T |
|
| Q |
290 |
tggaaactcaacctcaaaactgagttaat |
318 |
Q |
| |
|
|| ||||||| ||||| || |||||||| |
|
|
| T |
6573460 |
tgataactcaatctcaataccgagttaat |
6573432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 7928 - 7565
Alignment:
| Q |
1 |
ctctattctcaaacaaaattctcctgacactgattttgctaaatcgttaacaagatcatgcataacaaagtacttgtaatcaacatatcctgatcgttga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||| ||| || || | || | |||| |||| |
|
|
| T |
7928 |
ctctatttgcaaacaaaattctcctgacactgattttgttaaatcattgacaagatcatgcatgacatagtgctcatatggatcaaa---tgattgttgg |
7832 |
T |
|
| Q |
101 |
aaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttgtcaattctgcagcacttcaacaaaccttctgccatccaaa |
200 |
Q |
| |
|
|||||||||| ||| || ||||| | || | |||||| || |||||||||||| ||||||| || ||| ||||||| |||||||||| ||||||||| |
|
|
| T |
7831 |
aaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctcccatccaaa |
7732 |
T |
|
| Q |
201 |
gcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaa |
300 |
Q |
| |
|
||||||| ||| | | || ||| |||| || | ||||| ||||||||||| ||||| |||||| | |||| |||||||||| |||| ||||||| |
|
|
| T |
7731 |
gcttgatcaatacttctttttcaaatctatagcccttgggaaaaatggaacaataggaaaagcaacgccttagatcagaagggagattatggtaactcaa |
7632 |
T |
|
| Q |
301 |
cctcaaaactgagttaatgttactctcaccctctgataaacaccacagatctgtctccaatatctta |
367 |
Q |
| |
|
|||| |||||||||||| | || || |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
7631 |
tctcagtactgagttaatggtgtgatccccgtctgataaacgccacatgtcggtctccaatatctta |
7565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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