View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_19 (Length: 356)
Name: NF16513_low_19
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 338
Target Start/End: Complemental strand, 2843645 - 2843339
Alignment:
| Q |
32 |
agagagtgagagagaacatatacctgcaacattcatatgcaaataattaactgccaaaaatgaaaatgcaatttcttgatagtagaagaaatcgagaagc |
131 |
Q |
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| T |
2843645 |
agagagtgagagagaagatatacctgcaacattcatatgcaaataattaactgccaaaaatgaaaatgcaatttcttgatagtagaagaaattgagaagc |
2843546 |
T |
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| Q |
132 |
ataagccatgaccatattttnnnnnnncataattgagtgtagcgtagatgaaattaagcatgcaatatttgatatctatgagatagctagacgctacata |
231 |
Q |
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| T |
2843545 |
ataagccatgaccatattttaaaaaaacataattgagtgtagcgtagatgaaattaagcatgcaatatttgatatctataagatagctagatgctacata |
2843446 |
T |
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| Q |
232 |
agatttcatcaacgctgcactcaatgatgtttctccaatatggggaattaattcacaatgtaaacatgtacaactttataatgagatccacatttccttg |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2843445 |
agatttcatcaacgctgcactcaatgatgtttctccaatatggggaattaattcacaatgtaaacatgtacaactttataatgagatccacatttccttc |
2843346 |
T |
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| Q |
332 |
taaaact |
338 |
Q |
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||||||| |
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| T |
2843345 |
taaaact |
2843339 |
T |
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