View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_2 (Length: 654)
Name: NF16513_low_2
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 34554337 - 34554824
Alignment:
| Q |
19 |
ttcaaacgtacttctttgtttggaatatgtgtgccttcgttgaagaggttattttttaggagttttgatgaaagacttcatattaacactcctcttcttg |
118 |
Q |
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| T |
34554337 |
ttcaaacgtacttctttgtttggaatatgtgtgccttcgttgaagaggttatttgttaggagttttgatgaaagacttcatattaaaactcctcttcttg |
34554436 |
T |
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| Q |
119 |
agtaacttgtgatgaaagaaactaaggcgattaactatgtggttgagaatttggacaatttgaaagaagcacatattggtatccattttgattatgnnnn |
218 |
Q |
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| T |
34554437 |
agtgccttgtgatgaaagaaactaaggcgattaactatgtggttgagaatttggacaatttgaaagaagcacatattggtatccattttgattatgaaaa |
34554536 |
T |
|
| Q |
219 |
nnnnnnnnnnnnnnnnnntatagcaaatcttttcaatggggttcgtaaaaccaggtttctttgcttagatttgtataccacagaggtatgattctttgct |
318 |
Q |
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| T |
34554537 |
taaaaaagtaaaagaaaatatagcaaatattttcaatggggttcgtaaaaccagatttctttgcttagatttgtataccacagaggtatgattctttgct |
34554636 |
T |
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| Q |
319 |
aaacttaccttctcttatcacgtgcacactgaattcatatgttttctacgttttttctccttccatttttgtaaacagttggtcagaaaagtatattata |
418 |
Q |
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| T |
34554637 |
aaacttaccttctcttatcacgtgcacactgaattcatatgttttctacgtttttttcccttccacttttgtaaacagttggttagaaaagtatattata |
34554736 |
T |
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| Q |
419 |
tataaggactaaaagttctatttaccccatgtttttagtataggaattgtatgttatttctcataattctttgttatttttatccact |
506 |
Q |
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| T |
34554737 |
tataaggactaaaagttctatttaccccatgtttttagtataggaattgtatgttatttctcataattctttgttatttttatccact |
34554824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 36283607 - 36283786
Alignment:
| Q |
31 |
tctttgtttggaatatgtgtgccttcgttgaagaggttattttttaggagttttgatgaaagacttcatattaacactcctcttcttgagtaacttgtga |
130 |
Q |
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|||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |
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| T |
36283607 |
tctttgtttggaatatgtgtgcctacattgaagaggttacatgttaggagttttgatgaaaaaattcatattaacactcctcttcttgagtaccttgtac |
36283706 |
T |
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| Q |
131 |
tgaaagaaactaaggcgattaactatgtggttgagaatttggacaatttgaaagaagcacatattggtatccattttgat |
210 |
Q |
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| T |
36283707 |
ttgaagaaactaaggcgagtaattatgaggttgagaatttgaacaaattgaaagaagcacgtattggtatctattttgat |
36283786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 36283813 - 36283882
Alignment:
| Q |
237 |
tatagcaaatcttttcaatggggttcgtaaaaccaggtttctttgcttagatttgtataccacagaggta |
306 |
Q |
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| T |
36283813 |
tatatcaaatctcctcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggta |
36283882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 499 - 637
Target Start/End: Original strand, 36275872 - 36276011
Alignment:
| Q |
499 |
tatccactagatctaagattcaaacctcgttatctctattgtcacaaattttaacag-tttccacttgcaccaaagaaaatgagatgaatgagtagggcg |
597 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36275872 |
tatccactagatcgaagattcaaacctcgttatctctattgtcacaaattttaacaggtttccacttacaccaaagaaaatgagatgaatgagtagggcg |
36275971 |
T |
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| Q |
598 |
taagtccttcagagttttgtcctttataaatatgtctcat |
637 |
Q |
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| T |
36275972 |
taagtacttcatcgttttgtcctttataaatatgtctcat |
36276011 |
T |
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Back To:
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