View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_20 (Length: 356)
Name: NF16513_low_20
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 144 - 342
Target Start/End: Original strand, 44828782 - 44828977
Alignment:
| Q |
144 |
gatgtgaaataatgtttgatgagaatgaattaattgcccatacttaacatgtctaccacaactagattcatcatctaaaatttgaactatcctccatgtg |
243 |
Q |
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| T |
44828782 |
gatgtaaaataatgtttgatgagaatgaattaattgcccatacttaacatgtctaccacaactaga---atcatataaaatttgaactatcctccatgtg |
44828878 |
T |
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| Q |
244 |
gtttcaattctatagtatatggaaaatatatttgtattatttgaaagaatttggaaaattagtgttctatgcttttaactttagagattaaataaaaag |
342 |
Q |
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| T |
44828879 |
gtttcaattctatagtatatggaaaatatatttgtattatttgaaagaatttggaaaattagtgttctatgcctttaactttagagattaaataaaaag |
44828977 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 44828686 - 44828781
Alignment:
| Q |
12 |
acagatcttaaa-aatgtcacttgcaagctaaataattccttccaaacgtagctaacaaatgtgggatccttgttactcacaattgcatgaagctt |
106 |
Q |
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| T |
44828686 |
acagatcttaaagaatgtcacttgcaacctaaataattccttccaaacgtggctaagaaatgtaggatccttgtcactcacaattgcatgaagctt |
44828781 |
T |
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