View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_24 (Length: 306)
Name: NF16513_low_24
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 27449961 - 27449678
Alignment:
| Q |
16 |
acagagaagccagatatgatgcttcctttgagaatggatatgatgtatgtaaaagaacaattctgcactttgcaaatctcttgtcctcaagaacattgtg |
115 |
Q |
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| T |
27449961 |
acagagaagccagatatgatgcttcctttgagaatggatatgatgtatgtaaaagaacaattctgcactttgcaaatctcttgtcctcaagaacattgtg |
27449862 |
T |
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| Q |
116 |
gagataaagaggatttgacattcttagattcaaacctctatcaccaaagctattattaatagaaagaaaagattagtatcttaattaataggtactaaag |
215 |
Q |
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| T |
27449861 |
gagataaagaggatttgacattcttagattcaaacctctatcaccaaagctattattaatagaaagaaaagattagtatcttaattaataggtactaaag |
27449762 |
T |
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| Q |
216 |
agtagcactatagtggtaaattcacccaaatatgattagaaatcaatgaaggtagcaatataaaacaatccattaccctctgtg |
299 |
Q |
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| T |
27449761 |
agtagcactatagtggtaaattcacccaaatatgatcagaaatcaatgaaggtaacaatataaaacaatccattaccctgtgtg |
27449678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 27425050 - 27425001
Alignment:
| Q |
27 |
agatatgatgcttcctttgagaatggatatgatgtatgtaaaagaacaat |
76 |
Q |
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| T |
27425050 |
agatatgatgcttcctttgagaatggataggatgcatgtaaaagaacaat |
27425001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 27404022 - 27403976
Alignment:
| Q |
27 |
agatatgatgcttcctttgagaatggatatgatgtatgtaaaagaac |
73 |
Q |
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| T |
27404022 |
agatatgatgcttcccttgagaatggataggatgcatgtaaaagaac |
27403976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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