View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16513_low_27 (Length: 265)

Name: NF16513_low_27
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16513_low_27
NF16513_low_27
[»] chr3 (3 HSPs)
chr3 (148-265)||(13219166-13219283)
chr3 (40-153)||(11634038-11634151)
chr3 (223-265)||(13217017-13217059)
[»] chr5 (2 HSPs)
chr5 (2-153)||(26702888-26703035)
chr5 (2-153)||(26972621-26972768)
[»] scaffold0002 (1 HSPs)
scaffold0002 (162-263)||(238428-238529)
[»] chr7 (4 HSPs)
chr7 (34-153)||(11674120-11674239)
chr7 (2-153)||(22301023-22301169)
chr7 (2-148)||(3850416-3850557)
chr7 (30-115)||(39426361-39426445)
[»] chr1 (6 HSPs)
chr1 (2-153)||(24981034-24981180)
chr1 (2-115)||(12141561-12141670)
chr1 (30-117)||(4242476-4242563)
chr1 (41-115)||(1953802-1953876)
chr1 (2-119)||(51465584-51465695)
chr1 (65-141)||(26310465-26310541)
[»] chr6 (4 HSPs)
chr6 (34-153)||(19697724-19697843)
chr6 (66-117)||(6591757-6591808)
chr6 (65-120)||(19976207-19976262)
chr6 (30-87)||(15518139-15518197)
[»] chr2 (2 HSPs)
chr2 (2-153)||(14433471-14433617)
chr2 (34-115)||(18739029-18739109)
[»] chr8 (5 HSPs)
chr8 (2-117)||(39655604-39655717)
chr8 (42-120)||(21347238-21347316)
chr8 (2-140)||(17028454-17028588)
chr8 (2-140)||(17558890-17559024)
chr8 (32-118)||(31183821-31183907)
[»] chr4 (2 HSPs)
chr4 (2-115)||(44643551-44643660)
chr4 (223-265)||(18177035-18177077)
[»] scaffold0014 (1 HSPs)
scaffold0014 (34-153)||(82741-82860)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 13219166 - 13219283
Alignment:
Q  148 tatttagcacttcgcaaggcgcgggaactgccattctaacacttctcgggggattccatcctcaaacgcaaagtttatggctgacggatatggcacatca 247  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13219166 tatttagtacttcgcaaggcgcgggaactgccattctaacacttctcgggggattccatcctcaaacgcaaagtttatggctgaccgatatggcacatca 13219265  T
Q  248 tcatttagctattgcaat 265  Q
    ||||||||||||||||||    
T  13219266 tcatttagctattgcaat 13219283  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 11634151 - 11634038
Alignment:
Q  40 ttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttgagctttagtttgctttatt 139  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||| || |||||| | || |||||||||||||||  ||  || ||| ||  |||||||    
T  11634151 ttgttttgcaggtttcctctaatttgatttgtgaagattttgatgaagctgtgtctgcaatcaaattcgataagttcattttgccttatttcactttatt 11634052  T
Q  140 attagtcatattta 153  Q
    ||||||||||||||    
T  11634051 attagtcatattta 11634038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 13217017 - 13217059
Alignment:
Q  223 tatggctgacggatatggcacatcatcatttagctattgcaat 265  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  13217017 tatggctgaccgatattgcacatcatcatttagctattgcaat 13217059  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 26703035 - 26702888
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    ||||| ||||||| ||||||||||||    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||   |||    
T  26703035 gactaagtcacgcatcaggttacata----acagtgttttgtttagcaggtttcctctaatttgatttgtgaaggttttgatggagttatgtcgacgacc 26702940  T
Q  102 aaattcgataagtttcttgagctttagtttgctttattattagtcatattta 153  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||    
T  26702939 aaattcgataaatttcttgtgcttcattttactttattattagtcatattta 26702888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 26972768 - 26972621
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    ||||| ||||||| ||||||||||||    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||   |||    
T  26972768 gactaagtcacgcatcaggttacata----acagtgttttgtttagcaggtttcctctaatttgatttgtgaaggttttgatggagttatgtcgacgacc 26972673  T
Q  102 aaattcgataagtttcttgagctttagtttgctttattattagtcatattta 153  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||    
T  26972672 aaattcgataaatttcttgtgcttcattttactttattattagtcatattta 26972621  T

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Target: scaffold0002 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 238529 - 238428
Alignment:
Q  162 caaggcgcgggaactgccattctaacacttctcgggggattccatcctcaaacgcaaagtttatggctgacggatatggcacatcatcatttagctattg 261  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||| |||||||| || ||||||||||||||||    
T  238529 caaggagcgggaactgccattctaactcttcttgggggattccatccacaaacacaaagtttgtggctgactgatatggctcaccatcatttagctattg 238430  T
Q  262 ca 263  Q
    ||    
T  238429 ca 238428  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 11674120 - 11674239
Alignment:
Q  34 agtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttgagctttagtttgc 133  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||| ||||||  ||| |||||||||||||| |||   ||||  ||  |    
T  11674120 agtgttttgttttgcaggtttcccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagttccttttactttgtttcac 11674219  T
Q  134 tttattattagtcatattta 153  Q
    ||||||||||||||||||||    
T  11674220 tttattattagtcatattta 11674239  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 22301169 - 22301023
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    ||||||||||||||||||||||||||    | ||| ||||||||||||||||||| | |||| |||||||||||||||||||||| |  |||||  ||||    
T  22301169 gactatgtcacgcctcaggttacata----atagtattttgttttgcaggtttccctaaatt-gatttgtgaaggttttgatggaatcatgtcgacaacc 22301075  T
Q  102 aaattcgataagtttcttgagctttagtttgctttattattagtcatattta 153  Q
    |||||||||||||| |||   ||||  ||  |||||||||||||||||||||    
T  22301074 aaattcgataagttccttttactttgtttcactttattattagtcatattta 22301023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 3850557 - 3850416
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    |||||||||||||||||| |||||||    ||||||| ||||||| |||||||||| ||||| ||||||| |||  || |||||||   |||||| |||     
T  3850557 gactatgtcacgcctcagattacata----acagtgtgttgttttacaggtttcctctaatttgatttgtaaagactt-gatggagccctgtcggcaact 3850463  T
Q  102 aaattcgataagtttcttgagctttagtttgctttattattagtcat 148  Q
    ||||| ||||||||||||  |||||| ||| ||||||||||| ||||    
T  3850462 aaatttgataagtttcttatgctttattttactttattattaatcat 3850416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 39426445 - 39426361
Alignment:
Q  30 taacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtt 115  Q
    ||||||||  || ||||| ||||||||| || || ||||||||||  ||||||||| |||||||| | ||||||||||||||||||    
T  39426445 taacagtgcgttattttgtaggtttcctctactttgatttgtgaaaattttgatgg-gttgtgtccgcaaccaaattcgataagtt 39426361  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 24981180 - 24981034
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    ||||||||||||||||||||||||||    | ||| |||||||||||||||||||  |||||| |||||||||||||||| |||| ||||||||  |||     
T  24981180 gactatgtcacgcctcaggttacata----atagtattttgttttgcaggtttcccctaattaaatttgtgaaggttttg-tggaattgtgtcgacaact 24981086  T
Q  102 aaattcgataagtttcttgagctttagtttgctttattattagtcatattta 153  Q
    |||||||||||||| |||   ||||  ||  |||||||||||||||||||||    
T  24981085 aaattcgataagttccttttactttgtttcactttattattagtcatattta 24981034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 12141670 - 12141561
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    |||||||||||||||||||||||     |||| |||| ||||||| || ||||| ||||||| ||||||||||| |||||||| || |||||||| ||||    
T  12141670 gactatgtcacgcctcaggttac----ttaacggtgtgttgttttacatgtttcttttaatttgatttgtgaagattttgatgaagatgtgtcggcaacc 12141575  T
Q  102 aaattcgataagtt 115  Q
    ||||||||||||||    
T  12141574 aaattcgataagtt 12141561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 4242563 - 4242476
Alignment:
Q  30 taacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttc 117  Q
    |||||||||  |||||||||||||||||  |||| |||||| |||| |||||||||||||||||||  |||||||||| |||||||||    
T  4242563 taacagtgtgctgttttgcaggtttcctccaatttgatttgcgaagattttgatggagttgtgtcgacaaccaaattcaataagtttc 4242476  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 1953802 - 1953876
Alignment:
Q  41 tgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtt 115  Q
    ||||||| ||||||||| || || ||||||||||| ||||||||| | |||||||| ||||||||||||||||||    
T  1953802 tgttttgtaggtttcctctactttgatttgtgaagattttgatggggctgtgtcggcaaccaaattcgataagtt 1953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 51465584 - 51465695
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    |||||||||||||||||| |||| |     ||||||| |||||||  ||||||||| || || ||||||||||| ||  ||||||| |||||||| ||||    
T  51465584 gactatgtcacgcctcagattacttt----acagtgtattgttttttaggtttcctctactttgatttgtgaagatt--gatggagctgtgtcggcaacc 51465677  T
Q  102 aaattcgataagtttctt 119  Q
    ||||||||||||||||||    
T  51465678 aaattcgataagtttctt 51465695  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 26310465 - 26310541
Alignment:
Q  65 gatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttgagctttagtttgctttattat 141  Q
    ||||||||| | ||||||||||| ||||||   ||||||||||||||||||||||| |||| | ||| |||||||||    
T  26310465 gatttgtgacgattttgatggagctgtgtcaacaaccaaattcgataagtttcttgtgcttgattttactttattat 26310541  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 19697843 - 19697724
Alignment:
Q  34 agtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttgagctttagtttgc 133  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||| ||||||  ||| |||||||||||||| |||   || |  ||  |    
T  19697843 agtgttttgttttgcaggtttcccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagttccttttactctgtttcac 19697744  T
Q  134 tttattattagtcatattta 153  Q
    ||||||||||||||||||||    
T  19697743 tttattattagtcatattta 19697724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 6591808 - 6591757
Alignment:
Q  66 atttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttc 117  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  6591808 atttgtgaagattttgatggagctgtgtcggcaaccaaattcgataagtttc 6591757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 19976207 - 19976262
Alignment:
Q  65 gatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttg 120  Q
    ||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||    
T  19976207 gatttgtgaagattttgatggagttttgtcggcaacaaaattcgataagtttcttg 19976262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 15518139 - 15518197
Alignment:
Q  30 taacagtgttttgttttgcaggtttcct-ttaattagatttgtgaaggttttgatggag 87  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||| ||| |||||||    
T  15518139 taacagtgtgttgttttgcaggtttcctataaattagatttgtgaagatttcgatggag 15518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 14433617 - 14433471
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    ||||||||||||||||||||||||||    ||||||| |||||||||||||||| | |||||  |||||||||| |||||||||||   |||||  ||      
T  14433617 gactatgtcacgcctcaggttacata----acagtgtattgttttgcaggtttcttctaatttaatttgtgaagattttgatggagccatgtcgacaatt 14433522  T
Q  102 aaattcgataagtttcttgagctttagtttgctttattattagtcatattta 153  Q
    |||||||||||||| ||| |  |||| ||| |||||||||||||||||||||    
T  14433521 aaattcgataagttcctt-atttttattttactttattattagtcatattta 14433471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 18739109 - 18739029
Alignment:
Q  34 agtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtt 115  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||  ||| ||||||||||||||    
T  18739109 agtgttttgttttgcaggtttccct-aattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 18739029  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 39655717 - 39655604
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttg--caggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaa 99  Q
    |||||||||||||||||||||||     ||||||||| ||||||||  ||||||||||  |||| ||||||||||| ||||||||||| |||||||| ||    
T  39655717 gactatgtcacgcctcaggttac----ttaacagtgtgttgttttgcacaggtttcctccaatttgatttgtgaagattttgatggagctgtgtcggcaa 39655622  T
Q  100 ccaaattcgataagtttc 117  Q
     |||||||||||||||||    
T  39655621 tcaaattcgataagtttc 39655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 21347238 - 21347316
Alignment:
Q  42 gttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttg 120  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||  ||||||||| ||||| |||||||    
T  21347238 gttttgcaggtttcctttaatttgatttgtgaagattttgatagagctgtgtcgacaaccaaatttgataaatttcttg 21347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 17028454 - 17028588
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    |||| |||||||||||||||||||||    | ||| ||||||||||||||||| |  ||||| ||||||||||| |||||||||||| || |    |||     
T  17028454 gactgtgtcacgcctcaggttacata----atagtattttgttttgcaggttttccctaatttgatttgtgaagattttgatggagtcgtatgaacaact 17028549  T
Q  102 aaattcgataagtttcttgagctttagtttgctttatta 140  Q
    |||||||||||||||||||||  ||| ||| ||||||||    
T  17028550 aaattcgataagtttcttgagtcttattttactttatta 17028588  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 17558890 - 17559024
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    |||| |||||||||||||||||||||    | ||| ||||||||||||||||| |  ||||| ||||||||||| |||||||||||| || |    |||     
T  17558890 gactgtgtcacgcctcaggttacata----atagtattttgttttgcaggttttccctaatttgatttgtgaagattttgatggagtcgtatgaacaact 17558985  T
Q  102 aaattcgataagtttcttgagctttagtttgctttatta 140  Q
    |||||||||||||||||||||  ||| ||| ||||||||    
T  17558986 aaattcgataagtttcttgagtcttattttactttatta 17559024  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 31183821 - 31183907
Alignment:
Q  32 acagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttct 118  Q
    ||||||| ||| |||||||||||| | ||| | ||||| ||||| ||||||||||| ||||||   |||||||||||||||||||||    
T  31183821 acagtgtgttgatttgcaggtttcttctaagttgatttatgaagattttgatggagctgtgtctacaaccaaattcgataagtttct 31183907  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 44643551 - 44643660
Alignment:
Q  2 gactatgtcacgcctcaggttacatatataacagtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaacc 101  Q
    |||||||||||||||||||||||     |||||| || |||||||||| ||||| | ||||| ||||||||||| ||||||||||| | |||||| ||||    
T  44643551 gactatgtcacgcctcaggttac----ttaacagcgtgttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagctttgtcggcaacc 44643646  T
Q  102 aaattcgataagtt 115  Q
    ||||||||||||||    
T  44643647 aaattcgataagtt 44643660  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 18177077 - 18177035
Alignment:
Q  223 tatggctgacggatatggcacatcatcatttagctattgcaat 265  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  18177077 tatggctgaccgatattgcacatcatcatttagctattgcaat 18177035  T

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Target: scaffold0014 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 82741 - 82860
Alignment:
Q  34 agtgttttgttttgcaggtttcctttaattagatttgtgaaggttttgatggagttgtgtcggtaaccaaattcgataagtttcttgagctttagtttgc 133  Q
    ||||||||| ||||||||||| ||  ||||| ||||||||||||||||||||| | ||||||  ||| |||||||| ||||| |||   ||||  ||  |    
T  82741 agtgttttgatttgcaggttttctcaaattaaatttgtgaaggttttgatggaatcgtgtcgacaactaaattcgacaagttccttttactttgtttcac 82840  T
Q  134 tttattattagtcatattta 153  Q
    ||||||||||||||||||||    
T  82841 tttattattagtcatattta 82860  T

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