View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_28 (Length: 260)
Name: NF16513_low_28
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2666558 - 2666330
Alignment:
| Q |
1 |
gtagcagttttctagtacttattttgctgaacacttaccaagacataagatttttatcccacaaaaagctgttatttatattaacaaaaaatattgtgta |
100 |
Q |
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| T |
2666558 |
gtagcagttttctagtacttattttgctgaatacttactaagacataagatttttatcccacaaaaagctgttatgtatattaacaaaaaatattgtgta |
2666459 |
T |
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| Q |
101 |
acatgtatcatttacattcaagatgataaatcttcccctcaaaagatgataaatcttgagcaagaaaatggaagaattaggttgaatgaatgaaaaatat |
200 |
Q |
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| T |
2666458 |
--------------cattcaagatgataaatcttcccctcaaaagatgataaatcttgagcaaaaaaatggaagaattaggttgagtgaatgaaaaatat |
2666373 |
T |
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| Q |
201 |
acagatagaaattgtgaatgatatttattgtacctcagttctg |
243 |
Q |
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| T |
2666372 |
agagatagaaattgtgaatgatatttattgtacctcagttctg |
2666330 |
T |
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