View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_29 (Length: 255)
Name: NF16513_low_29
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 4623425 - 4623257
Alignment:
| Q |
11 |
cataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatctt |
110 |
Q |
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| T |
4623425 |
cataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatctt |
4623326 |
T |
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| Q |
111 |
ttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaattatattatttctgcactctaa |
179 |
Q |
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| T |
4623325 |
ttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaattatattattttcgcactctaa |
4623257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 4598922 - 4598799
Alignment:
| Q |
11 |
cataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatctt |
110 |
Q |
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| T |
4598922 |
cataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcgctcatggatactaacagaattgactactattatcgtcatctatattatgtt |
4598823 |
T |
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| Q |
111 |
ttatctgcaatgaggtagcaccct |
134 |
Q |
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| T |
4598822 |
tcttctgcaatcaggtagcaccct |
4598799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 25037406 - 25037315
Alignment:
| Q |
30 |
aatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat |
121 |
Q |
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| T |
25037406 |
aatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttcatctgcaat |
25037315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 25016125 - 25016032
Alignment:
| Q |
28 |
tcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat |
121 |
Q |
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| T |
25016125 |
tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttcatctgcaat |
25016032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25002270 - 25002314
Alignment:
| Q |
66 |
gatactaacagaattgattacttttatcgtcatctatattatctt |
110 |
Q |
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| T |
25002270 |
gatactgacagaattgattacttttatcgtcatctttattatctt |
25002314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 25044977 - 25044895
Alignment:
| Q |
28 |
tcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatctt |
110 |
Q |
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| T |
25044977 |
tcaatgatccaacactgtcgcttgaagaatcccttatagatactctcagaattgattacttttatcgtcatctttattatctt |
25044895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 25187644 - 25187560
Alignment:
| Q |
14 |
aggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcat |
98 |
Q |
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| T |
25187644 |
aggtatgaatgaattcaacgatgcaacactttctgtagaagaagcacttttggatacttacagaattgattactattaccgtcat |
25187560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 18805598 - 18805725
Alignment:
| Q |
31 |
atgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaatgaggtagca |
130 |
Q |
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|||||||||| |||||||| |||||| | |||||||||| | | |||||||||||| |||||||||||| ||||| || ||||||||| |||||||| |
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| T |
18805598 |
atgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattaccattatcgtcatctttattacgttgcatctgcaatcaggtagca |
18805697 |
T |
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| Q |
131 |
ccctctatttacttaaatcagaatcaat |
158 |
Q |
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|||||| ||||||||||| ||||||||| |
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| T |
18805698 |
ccctctctttacttaaataagaatcaat |
18805725 |
T |
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