View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_3 (Length: 563)
Name: NF16513_low_3
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 12607345 - 12607867
Alignment:
| Q |
1 |
agttccttaaaatttgtattagtgctttatgaaaacaagcaagcaaacaccatttattggtgcacgtggtaggcaccatttgcctgagtttctcaattgc |
100 |
Q |
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| T |
12607345 |
agttccttaaaatttgtattagtgctttatgaaaacaagcaagcaaacaccatttattggtgcacgtggtaggcaccatttgcctgagtttctcaattgc |
12607444 |
T |
|
| Q |
101 |
ttgttccctcttaactctaatttcttctgcttcttgcttggtggggggttcaattcgcttttcgtacgccaaggtcataataattgacaactaagcaaat |
200 |
Q |
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| T |
12607445 |
ttgttccctcttaactctaatttcttctgcttctggcttggtggggggttcaattcgcttttcgtacgccaaggtcataataattgacaactaagcaaat |
12607544 |
T |
|
| Q |
201 |
tattgtaatttagtttgtactatatttgatgatttatttgttaaagttatgtcataatccttgaccaaatatgtcttagtcatttgagctggttaatttt |
300 |
Q |
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| T |
12607545 |
tattgtaatttagtttgtactatatttgatgatttatttgttaaagttatgtcatagtccttgaccaaatatgtcttagtcatttgagctggttaatttt |
12607644 |
T |
|
| Q |
301 |
ctaatcacgtgtataagtgtatgattattatatcaacattatctataaaattattagcaattatctattaaaatgttaccaatcaatcatgatggaaatt |
400 |
Q |
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| T |
12607645 |
ctaatcacgtgtataagtgtatgattattatatcaacattatctataaaattattagcaattatctattaaaatgttaccaatcaatcatgatggaaatt |
12607744 |
T |
|
| Q |
401 |
ttgatatttgcacgcaatttggaatacatgcaatgcaatgcaatgatccaaattttgtgttaatcatagcattattgtgattaatttaaagagttgctac |
500 |
Q |
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| T |
12607745 |
ttgatatttgcacgcaatttggaacac-----atgcaatgcaatgatccaaattttgtgtcaatcatagcattattgtgattaatttaaagagttgctac |
12607839 |
T |
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| Q |
501 |
aaaaacatatgcaaatcttttatacaga |
528 |
Q |
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| T |
12607840 |
aaaaacatatgcaaatattttatacaga |
12607867 |
T |
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