View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_31 (Length: 242)
Name: NF16513_low_31
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 13874629 - 13874466
Alignment:
| Q |
76 |
tatttttccttaccactacaagtgattaatggcctcattt-cgttgttaattgtgtttacaggaccaagtgatcactacacttgtgaagttcttagtaat |
174 |
Q |
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| T |
13874629 |
tatttgtccttacaacgtcaagtgatcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttgtgaagttcttggtaat |
13874530 |
T |
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| Q |
175 |
tctcattcattctattg-ccataaattgcttgttagcttgtctaatcataacattgatagcatc |
237 |
Q |
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| T |
13874529 |
tctcattcattctattgcccataaatattttgctggcttgtcaaatcatagcattgataacatc |
13874466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13878858 - 13878786
Alignment:
| Q |
1 |
aatagatagataacttttctttttattcatgagctgagggctgaggcttttaatgtgtgaatgaatcagagta |
73 |
Q |
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| T |
13878858 |
aatagatagataacttttcactttattcatgagctgagggctgaggcttttaatgtgtgaatgaatcagagta |
13878786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 13884566 - 13884475
Alignment:
| Q |
89 |
cactacaagtgattaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
182 |
Q |
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| T |
13884566 |
cactgcaagtaattaatggcttcatttccttgttaattgtgtttatggg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13884475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 13872260 - 13872183
Alignment:
| Q |
103 |
aatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
182 |
Q |
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| T |
13872260 |
aatggccccatttccttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13872183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 12957643 - 12957723
Alignment:
| Q |
100 |
attaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacac-ttgtgaagttcttagtaattctcattc |
182 |
Q |
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| T |
12957643 |
attaatggcctcatttccttgttaattgtgtttatggg---aagtgattactacactttttgaagttcttggtaattgtcattc |
12957723 |
T |
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