View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16513_low_5 (Length: 495)

Name: NF16513_low_5
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16513_low_5
NF16513_low_5
[»] chr5 (7 HSPs)
chr5 (232-387)||(10917137-10917292)
chr5 (1-94)||(10916905-10916998)
chr5 (1-80)||(7992190-7992269)
chr5 (1-82)||(41377634-41377714)
chr5 (36-94)||(5240655-5240713)
chr5 (385-434)||(3349183-3349232)
chr5 (387-431)||(4149150-4149194)
[»] chr4 (9 HSPs)
chr4 (386-452)||(54703222-54703288)
chr4 (1-80)||(2588293-2588372)
chr4 (1-80)||(4289881-4289960)
chr4 (1-80)||(16497512-16497591)
chr4 (1-80)||(5650543-5650622)
chr4 (1-80)||(49577364-49577443)
chr4 (12-80)||(16497714-16497782)
chr4 (1-80)||(39598911-39598990)
chr4 (10-80)||(52249337-52249407)
[»] chr6 (3 HSPs)
chr6 (1-80)||(13425501-13425580)
chr6 (1-82)||(18133705-18133786)
chr6 (1-82)||(23889845-23889926)
[»] chr2 (4 HSPs)
chr2 (1-80)||(44673389-44673468)
chr2 (8-82)||(36536191-36536265)
chr2 (1-80)||(25438517-25438596)
chr2 (9-82)||(42975667-42975740)
[»] chr7 (5 HSPs)
chr7 (3-80)||(12859030-12859107)
chr7 (1-80)||(19886793-19886872)
chr7 (1-80)||(32775392-32775471)
chr7 (1-82)||(36167531-36167612)
chr7 (36-80)||(5465526-5465570)
[»] chr8 (8 HSPs)
chr8 (1-80)||(1548365-1548444)
chr8 (1-80)||(3117931-3118010)
chr8 (1-80)||(23033603-23033682)
chr8 (1-76)||(34784301-34784376)
chr8 (3-77)||(29168312-29168386)
chr8 (1-72)||(3376132-3376203)
chr8 (1-80)||(20900994-20901073)
chr8 (388-434)||(39609398-39609443)
[»] chr3 (7 HSPs)
chr3 (1-80)||(7323064-7323143)
chr3 (1-80)||(32130384-32130463)
chr3 (1-80)||(53208488-53208567)
chr3 (1-82)||(7227298-7227379)
chr3 (1-80)||(9454844-9454923)
chr3 (1-82)||(50064090-50064171)
chr3 (232-277)||(7227179-7227224)
[»] scaffold0325 (1 HSPs)
scaffold0325 (1-82)||(8565-8646)
[»] chr1 (3 HSPs)
chr1 (4-78)||(47523897-47523971)
chr1 (1-82)||(18990143-18990224)
chr1 (2-59)||(33966877-33966934)
[»] scaffold0302 (1 HSPs)
scaffold0302 (1-78)||(17314-17391)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 10917137 - 10917292
Alignment:
Q  232 cgaactggagtaaagtcgaagcacggtcgaggtgttgtggaacgtaaaattgaatgatcatacaagctctcgatactagctacactgctcttgattacct 331  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10917137 cgaactggagtaaagtcgaagcgcggtcgaggtgttgtggaacgtaaaattgaatgatcatacaagctctcgatgctagctacactgctcttgattacct 10917236  T
Q  332 acttgtgatgtagtctcttattacttgaactaatctattggatatcttttaaggaa 387  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10917237 acttgtgatgtagtctcttattacttcgactaatctattggatatcttttaaggaa 10917292  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 10916905 - 10916998
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaagagcataggaac 94  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10916905 acgaggaacgtaacacgttttataagtagagtcgatagattattgatagagttgagagaaatatatagagaaaatagaggaaaaacataggaac 10916998  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7992190 - 7992269
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  7992190 acgaggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagagaaatatatagggaaaatagagg 7992269  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41377634 - 41377714
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||||||||||| |||||||||||  | | |||||| ||||||||||||||||||| | | ||||||||||||||||    
T  41377634 acgaggaacgtaacacgatttgtaagtaggattggtaggttgttgatagagttgagagaaa-aaacagagaaaatagaggaa 41377714  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 5240713 - 5240655
Alignment:
Q  36 taggttattgatagagttgagagaaatatatagagaaaatagaggaagagcataggaac 94  Q
    |||||| ||||||||||||||||||||| ||||  |||||||||||| | |||||||||    
T  5240713 taggttgttgatagagttgagagaaatagatagtaaaaatagaggaaaaacataggaac 5240655  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 3349232 - 3349183
Alignment:
Q  385 gaacagaaatgataaacaaacacacaataactaacacaaatacgacacca 434  Q
    |||||| ||||||||||| ||||| || ||| ||||||||||||||||||    
T  3349232 gaacaggaatgataaacagacacaaaacaacaaacacaaatacgacacca 3349183  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 4149194 - 4149150
Alignment:
Q  387 acagaaatgataaacaaacacacaataactaacacaaatacgaca 431  Q
    |||||||||||||||||||||| || | | |||||||||||||||    
T  4149194 acagaaatgataaacaaacacaaaaaatcaaacacaaatacgaca 4149150  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 54703288 - 54703222
Alignment:
Q  386 aacagaaatgataaacaaacacacaataactaacacaaatacgacaccaccgtatcaatatacggta 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54703288 aacagaaatgataaacaaacacacaataactaacacaaatacgacaccactgtatcaatatacggta 54703222  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2588293 - 2588372
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  2588293 acgaggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagagaaatatatagggaaaatagagg 2588372  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4289881 - 4289960
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    |||||||||||||| || || ||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  4289881 acgaggaacgtaacccggttcgtaagtaggatcggtaggttgttgatagagttgagagaaatagatagagaaaatagagg 4289960  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16497512 - 16497591
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  16497512 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 16497591  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5650543 - 5650622
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||| | | |||||| ||||||||||||||||| |||||||||||    
T  5650543 acgaggaacgtaacacggttcgtaagtaggatcgataggctgtcgatagaattgagagaaatatatagggaaaatagagg 5650622  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 49577364 - 49577443
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||  ||  |||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  49577364 acgaggaacgtaacacagttcataagtaggatcggtaggttgttgatagagttgagagaaatagatagagaaaatagagg 49577443  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 16497714 - 16497782
Alignment:
Q  12 aacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    |||||| || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  16497714 aacacggttcgtaagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 16497782  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 39598911 - 39598990
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    |||||||||||| |||  || ||||||||  ||| |||||| |||| ||||||||| |||||| ||||||||||||||||    
T  39598911 acgaggaacgtagcactgttcgtaagtaggatcggtaggttgttgacagagttgagcgaaatagatagagaaaatagagg 39598990  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 52249337 - 52249407
Alignment:
Q  10 gtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    |||||||| || || |||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  52249337 gtaacacggttcgtcagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 52249407  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13425501 - 13425580
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  13425501 acgaggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagagaaatatatagggaaaatagagg 13425580  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18133705 - 18133786
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||||||||||| ||  |||||||  ||| |||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  18133705 acgaggaacgtaacacggttcataagtaggatcggtaggtttttgatagagttgacagaaataaatagagaaaatagaggaa 18133786  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23889845 - 23889926
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||||||||||| || || |||||  ||| |||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  23889845 acgaggaacgtaacacggttcgttagtaggatcggtaggtttttgatagagttgacagaaataaatagagaaaatagaggaa 23889926  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44673468 - 44673389
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  44673468 acgaggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagagaaatatatagggaaaatagagg 44673389  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 36536191 - 36536265
Alignment:
Q  8 acgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    |||||||||| |||||||||||  ||| |||||| |||||||||||||||| |||| ||||||||||||||||||    
T  36536191 acgtaacacggtttgtaagtaggatcggtaggttgttgatagagttgagaggaatagatagagaaaatagaggaa 36536265  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25438596 - 25438517
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| | |||| |  |||||||||||||||| |||||||||||    
T  25438596 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcgatataagtgagagaaatatatagggaaaatagagg 25438517  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 42975667 - 42975740
Alignment:
Q  9 cgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||| ||| |||||||  ||| |||||| ||||||||||||||||||| | | ||||||||||||||||    
T  42975667 cgtaacacgatttataagtaggatcggtaggttgttgatagagttgagagaaaaaaacagagaaaatagaggaa 42975740  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 12859030 - 12859107
Alignment:
Q  3 gaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||| || ||||||||  |||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  12859030 gaggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagagaaatatatagggaaaatagagg 12859107  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19886872 - 19886793
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  19886872 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 19886793  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32775471 - 32775392
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  32775471 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 32775392  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36167531 - 36167612
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||||||||||| || ||||||||  | |||||||| | |||||| ||||||||||||||||| |||||||||||||    
T  36167531 acgaggaacgtaacacggttcgtaagtaggattgataggttgtcgatagaattgagagaaatatatagggaaaatagaggaa 36167612  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 5465526 - 5465570
Alignment:
Q  36 taggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||    
T  5465526 taggttgttgatagagttgagagaaatagatagtgaaaatagagg 5465570  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1548444 - 1548365
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| |||||||| ||||||||||| ||||| |||||||||||    
T  1548444 acgaggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagagaaatgtatagggaaaatagagg 1548365  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3118010 - 3117931
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||| | || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  3118010 acgaggaacgtaacatggttcgtaagtaggatcgataggttgtagatagaattgagagaaatatatagggaaaatagagg 3117931  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23033682 - 23033603
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| |  ||||| ||||||||||||||||| |||||||||||    
T  23033682 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcaatagaattgagagaaatatatagggaaaatagagg 23033603  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34784301 - 34784376
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaata 76  Q
    ||||||||||||||||| |||||||||||  ||| |||||| | |||||| ||||||||||||||||| |||||||    
T  34784301 acgaggaacgtaacacggtttgtaagtaggatcgttaggttgtcgatagaattgagagaaatatatagggaaaata 34784376  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 29168312 - 29168386
Alignment:
Q  3 gaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatag 77  Q
    ||||||||||||||| || ||||||||  ||| |||||| ||||||||||||||||| ||| |||||||||||||    
T  29168312 gaggaacgtaacacggttcgtaagtaggatcggtaggttgttgatagagttgagagagatagatagagaaaatag 29168386  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3376132 - 3376203
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaa 72  Q
    ||||||||||||||||| || ||||||||  ||| |||||| ||||||||||||||| ||||| ||||||||    
T  3376132 acgaggaacgtaacacggttcgtaagtaggatcggtaggttgttgatagagttgagataaatagatagagaa 3376203  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 20901073 - 20900994
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || |||||| |  || ||||||| | |||||| |||||||||||||| || |||||||||||    
T  20901073 acgaggaacgtaacacggttcgtaagtgggatcaataggttgtcgatagaattgagagaaatatacagggaaaatagagg 20900994  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 39609443 - 39609398
Alignment:
Q  388 cagaaatgataaacaaacacacaataactaacacaaatacgacacca 434  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  39609443 cagaaatgataaacaaacaca-aaaaacaaacacaaatacgacacca 39609398  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 7323143 - 7323064
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  7323143 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 7323064  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32130463 - 32130384
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| || ||||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  32130463 acgaggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 32130384  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 53208488 - 53208567
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    ||||||||||||||||| ||  |||||||  |||||||||| | |||||| ||||||||||||||||| |||||||||||    
T  53208488 acgaggaacgtaacacggttcataagtaggatcgataggttgtcgatagaattgagagaaatatatagggaaaatagagg 53208567  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7227379 - 7227298
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    |||||||| ||| |||| || |||| |||  ||| |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  7227379 acgaggaatgtaccacggttcgtaattaggatcggtaggttgttgatagagttgagagaaatagatagagaaaatagaggaa 7227298  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9454923 - 9454844
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagagg 80  Q
    |||||||  |||||||| || ||||||||  ||| |||||| |||||||| ||||||||||||||||| |||||| ||||    
T  9454923 acgaggagtgtaacacggttcgtaagtaggatcggtaggttgttgatagaattgagagaaatatatagggaaaattgagg 9454844  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 50064171 - 50064090
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||||  || || || ||||||||  ||| |||||||||||||||||||||||| ||| | |||||| |||||||||    
T  50064171 acgaggaacgagacgcggttcgtaagtaggatcggtaggttattgatagagttgagagatataaacagagaatatagaggaa 50064090  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 7227224 - 7227179
Alignment:
Q  232 cgaactggagtaaagtcgaagcacggtcgaggtgttgtggaacgta 277  Q
    ||||| ||||||||||||||||| |||||||||| ||||| |||||    
T  7227224 cgaaccggagtaaagtcgaagcatggtcgaggtgctgtgggacgta 7227179  T

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Target: scaffold0325 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8646 - 8565
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||||| ||||| ||||||| |||  ||| |||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8646 acgaggaacgtgacacggtttgtaaataggatcgttaggtttttgatagagttgagtgaaataaatagagaaaatagaggaa 8565  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 47523971 - 47523897
Alignment:
Q  4 aggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaataga 78  Q
    |||||||||||||| || ||||||||  ||| |||||| ||||||||||||||||||||| | | ||||||||||    
T  47523971 aggaacgtaacacggttcgtaagtaggatcggtaggttgttgatagagttgagagaaatagagatagaaaataga 47523897  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18990143 - 18990224
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaatagaggaa 82  Q
    ||||||||| ||||| | |||||| || |  ||| |||||| |||||||||||||||||||||   ||| ||||||||||||    
T  18990143 acgaggaacataacatggtttgtatgttggatcggtaggttgttgatagagttgagagaaataataagataaaatagaggaa 18990224  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 33966934 - 33966877
Alignment:
Q  2 cgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagaga 59  Q
    ||||||| |||||||  || ||||||||  ||| ||||||||||||||||||||||||    
T  33966934 cgaggaatgtaacacagttcgtaagtaggatcggtaggttattgatagagttgagaga 33966877  T

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Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17391 - 17314
Alignment:
Q  1 acgaggaacgtaacacgttttgtaagtagagtcgataggttattgatagagttgagagaaatatatagagaaaataga 78  Q
    ||||||||||||||||| || ||||||||   |||||  || ||||||||||||||||||||| | ||||||||||||    
T  17391 acgaggaacgtaacacggttcgtaagtaggagcgatactttgttgatagagttgagagaaatagacagagaaaataga 17314  T

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