View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16513_low_8 (Length: 467)
Name: NF16513_low_8
Description: NF16513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16513_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 28699719 - 28699591
Alignment:
| Q |
18 |
gtacttggggcgtgttgtggagccatacttatatagacaaggtcatcataactgcttccatgcaatcttgcaacagatgcatgactaagttaagagatcg |
117 |
Q |
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| T |
28699719 |
gtacttggggcgtgtcgtggagccacacttatatagacaacgtcatcataactgcttccatgcaatctagcaacagatgcatgagtaagtt-agagatcg |
28699621 |
T |
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| Q |
118 |
gttcaacgattaagatcagcctgagatgat |
147 |
Q |
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| T |
28699620 |
gttcaacggttaagatcagcctgagatgat |
28699591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 28696808 - 28696763
Alignment:
| Q |
186 |
tagtcattgagattgatatatttagcaaaaagaaagtacatttcaa |
231 |
Q |
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| T |
28696808 |
tagtcattgagattgatatatttagcaaaaagaaagtacatttcaa |
28696763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 28684414 - 28684287
Alignment:
| Q |
18 |
gtacttggggcgtgttgtggagccatacttatatagacaaggtcatcataactgcttccatgcaatcttgcaacagatgcatgactaagttaagagatcg |
117 |
Q |
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| T |
28684414 |
gtacctggggcgtgtcgtggagccacacttata-------ggtcatcgtaactactttcatgaaatccagcgacagatgcatgagttagtta-gagatcg |
28684323 |
T |
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| Q |
118 |
gttcaacgattaagatcagcctgagatgatgttcct |
153 |
Q |
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| T |
28684322 |
gttcaacgattaagattaacctgaggtggtgttcct |
28684287 |
T |
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