View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16514_high_10 (Length: 374)

Name: NF16514_high_10
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16514_high_10
NF16514_high_10
[»] chr4 (9 HSPs)
chr4 (64-362)||(39870008-39870304)
chr4 (64-362)||(36013696-36013991)
chr4 (64-362)||(47326540-47326828)
chr4 (64-362)||(47341336-47341624)
chr4 (77-138)||(55514149-55514210)
chr4 (211-292)||(55514254-55514335)
chr4 (1-47)||(55513878-55513924)
chr4 (91-138)||(39112499-39112546)
chr4 (328-362)||(55514359-55514393)
[»] chr3 (1 HSPs)
chr3 (70-362)||(31598544-31598833)
[»] chr6 (2 HSPs)
chr6 (64-264)||(16765351-16765550)
chr6 (256-362)||(16764934-16765040)
[»] chr5 (3 HSPs)
chr5 (227-298)||(9142120-9142191)
chr5 (77-162)||(9142226-9142307)
chr5 (1-35)||(9142573-9142607)
[»] chr8 (1 HSPs)
chr8 (324-362)||(35943085-35943123)
[»] chr2 (1 HSPs)
chr2 (328-362)||(15602825-15602859)
[»] chr7 (1 HSPs)
chr7 (325-362)||(6730159-6730196)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 39870008 - 39870304
Alignment:
Q  64 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 163  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  39870008 aactagatgttagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtgaatttatgttgttt 39870106  T
Q  164 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  39870107 ctatgactgtgagcagtgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagat 39870206  T
Q  264 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||       |||| |||||||||||||||||||| |||||| ||||||    
T  39870207 atggtatgtgtggtctattattaaatcagtgttcctctttaatctaactgttc-aaaaaacttctccatggtgggaaacaacttttctttcccatgcta 39870304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 36013696 - 36013991
Alignment:
Q  64 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 163  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  36013696 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtgaatttgtgttgttt 36013794  T
Q  164 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  | ||||||||||||    
T  36013795 ctatgactgtgagcagtgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaag--actgtaaaaaagat 36013892  T
Q  264 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||       ||| |||||||||| ||||||||||| ||||| ||||||    
T  36013893 atggtatgtgtggtctatgattaaatcagtgttccactttaatctaactgttcaaaaaaactttcccatggtggtaaacaactttcatttcccatgcta 36013991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 47326540 - 47326828
Alignment:
Q  64 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 163  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  47326540 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagagg-aaaaatacttggtgtgaatttgtgttgttt 47326638  T
Q  164 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 263  Q
    ||||||||||| || |||||||||||||||       ||| ||||||||||| |||||||| ||||||||||  ||| ||||||| | ||||||||||||    
T  47326639 ctatgactgtgggcagtgaagaaaatggga-------ttcggtgatagtggatgtgggtgaaattcaatctc--gagattgaagacagtgtaaaaaagat 47326729  T
Q  264 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||| |||||||||||||||||||||||||||| ||||||    
T  47326730 atggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttcctttcccatgcta 47326828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 47341336 - 47341624
Alignment:
Q  64 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 163  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  47341336 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagagg-aaaaatacttggtgtgaatttgtgttgttt 47341434  T
Q  164 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 263  Q
    ||||||||||| || |||||||||||||||       ||| ||||||||||| |||||||| ||||||||||  ||| ||||||| | ||||||||||||    
T  47341435 ctatgactgtgggcagtgaagaaaatggga-------ttcggtgatagtggatgtgggtgaaattcaatctc--gagattgaagacagtgtaaaaaagat 47341525  T
Q  264 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||| |||||||||||||||||||||||||||| ||||||    
T  47341526 atggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttcctttcccatgcta 47341624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 55514149 - 55514210
Alignment:
Q  77 taaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 138  Q
    ||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  55514149 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 55514210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 55514254 - 55514335
Alignment:
Q  211 gtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagatatggtatgtgtggtctatgattaaatcag 292  Q
    |||||||||||| || ||||||| |||||||||||||| || ||||| |||||||||| || || |||||||||||||||||    
T  55514254 gtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagtagtctatgattaaatcag 55514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 55513878 - 55513924
Alignment:
Q  1 tgtatcaataatatagatgaatcaaactccaataaatttccccaaat 47  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  55513878 tgtaccaataatatagatgaatcaaactccaataaatctccacaaat 55513924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 39112546 - 39112499
Alignment:
Q  91 attagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 138  Q
    ||||||||||||| || ||||||||| |||| ||||||||||||||||    
T  39112546 attagtttgaataagttttattttagaaacagttgggagaggaaaaaa 39112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 55514359 - 55514393
Alignment:
Q  328 cccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||||||||||| ||||||    
T  55514359 cccatggtgggaaacaactttcctttcccatgcta 55514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 70 - 362
Target Start/End: Original strand, 31598544 - 31598833
Alignment:
Q  70 atgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgtttctatga 169  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  31598544 atgttaataaataagtaagtaattattttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtcaatttgtgttgtttctatga 31598642  T
Q  170 ctgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagatatggta 269  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||  |||||||||||||    
T  31598643 ctgtgagcaatgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagacagtgt--aaaagatatggta 31598740  T
Q  270 tgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||       ||| ||||||||||||||||||||| |||| | ||||||    
T  31598741 tgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaacttttcttttccatgcta 31598833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 64 - 264
Target Start/End: Complemental strand, 16765550 - 16765351
Alignment:
Q  64 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 163  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  16765550 aactggatgttagtaaatcagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtcaatttgtgttgttt 16765452  T
Q  164 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 263  Q
    |||||| ||||||  |||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  16765451 ctatgattgtgagtagtgaagaaaatgggattcatcctttcatgatagtggatgtgggtgaaattcaatctcatgaggttgaagaaagtgtaaaaaagat 16765352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 16765040 - 16764934
Alignment:
Q  256 aaaaagatatggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcc 355  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||       ||||||||||||||||||||||||||||||||    
T  16765040 aaaaacatatggtatgtgtggtctatgattaaataagtgttcctctttaatctaattgttcaaaaaaacttccccatggtgggaaacaactttcctttcc 16764941  T
Q  356 tatgcta 362  Q
     ||||||    
T  16764940 catgcta 16764934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 9142191 - 9142120
Alignment:
Q  227 ttcaatctcatgaggttgaagataatgtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttcc 298  Q
    ||||||| |||||||||||||| || ||||| |||||||||| || || |||||||||||||||||||||||    
T  9142191 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgggtagtctatgattaaatcagtgttcc 9142120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 9142307 - 9142226
Alignment:
Q  77 taaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgtt 162  Q
    ||||||| ||| ||||||||||||||| ||||| ||| |  ||||||||||||||||||||  |||| || |||||||||||||||    
T  9142307 taaataaataaataattagtttgaataagtcttttttga--aacaattgggagaggaaaaa--aattagtatgaatttgtgttgtt 9142226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9142607 - 9142573
Alignment:
Q  1 tgtatcaataatatagatgaatcaaactccaataa 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  9142607 tgtaccaataatatagatgaatcaaactccaataa 9142573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 35943123 - 35943085
Alignment:
Q  324 cttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  35943123 cttccccatggtgggaaacaacttccctttcccatgcta 35943085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 15602825 - 15602859
Alignment:
Q  328 cccatggtgggaaacaactttcctttcctatgcta 362  Q
    |||||||||||||||||||| ||||||||||||||    
T  15602825 cccatggtgggaaacaacttccctttcctatgcta 15602859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 6730159 - 6730196
Alignment:
Q  325 ttccccatggtgggaaacaactttcctttcctatgcta 362  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6730159 ttccccatggtgggaaacaacttccctttcccatgcta 6730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University