View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_high_14 (Length: 275)
Name: NF16514_high_14
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 18408195 - 18408036
Alignment:
| Q |
95 |
tcccacatcgaaagtgtgtagacaatatagacgtacatgtaccttataaaagagtattgtgcataccattgtttcctaaccacacattcggggacccaac |
194 |
Q |
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| T |
18408195 |
tcccacatcgaaagtgtgtagacaatatagacatacatgtaccttataaaagagtattgtgcataccattgtttccttaccacacattcagggacccaac |
18408096 |
T |
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| Q |
195 |
tttatataattgagatgtcccatgtacttttgtagtatatgctattcattgtttggacaata |
256 |
Q |
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| T |
18408095 |
tt--tataattaagctgtcccatgtacttttgtagtatatacaaatcattgtttggacaata |
18408036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 18429166 - 18429106
Alignment:
| Q |
94 |
gtcccacatcgaaagtgtgtagacaatatagacgtacatgtaccttataaaagagtattgtg |
155 |
Q |
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| T |
18429166 |
gtcccacatcgaaagtgtgtaaacaatatagacaaacatgtacc-tataaaacaggattgtg |
18429106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 18427231 - 18427185
Alignment:
| Q |
92 |
aagtcccacatcgaaagtgtgtagacaatatagacgtacatgtacct |
138 |
Q |
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| T |
18427231 |
aagtcccacatcgaaagtgtgtagacaacatgaacatacatgtacct |
18427185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 18410041 - 18409981
Alignment:
| Q |
94 |
gtcccacatcgaaagtgtgtagacaatatagacgtacatgtaccttataaaagagtattgtg |
155 |
Q |
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| T |
18410041 |
gtcccacatcgaaagtgtgtaaacaacatagacaaacatgtacc-tataaaacaggattgtg |
18409981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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