View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_high_3 (Length: 616)
Name: NF16514_high_3
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 9 - 616
Target Start/End: Original strand, 5395790 - 5396397
Alignment:
| Q |
9 |
aacagagacaatgacttcttcttcttcctcaaagaacaaatcctctgtcttcctaaacacaccatgtgccaccacaaccacagtggcaacactaaccgca |
108 |
Q |
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| T |
5395790 |
aacagaaacaatgacttcttcttcttcctcaaagaacaaatcctctgtcttcctaaacacaccatgtgccaccacaaccacagtggcaacactaaccgca |
5395889 |
T |
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| Q |
109 |
acaacaatattaacagtagcttgcgtaagaagcaacaaagccaccgtaacaaacgccatgagaacaaccacaattcgatcatcaacaagccgaccccata |
208 |
Q |
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| T |
5395890 |
acaacaatattaacagtagcttgcgtaagaagcaacaaagccaccgtaacaaacgccatgagaacaaccacaattcgatcatcaacaagccgaccccata |
5395989 |
T |
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| Q |
209 |
aaatcaccggctgatcacggaggaagtagaagaacaaccatgccgccattaggataacgaaaacaatgagtgagtaaggatgccataaaagactcagaaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5395990 |
aaatcaccggctgatcacggaggaagtagaagaacaaccatgccgccattaggataacgaaaacaatgagtgagtaaggatgccataaaaggctcagaaa |
5396089 |
T |
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| Q |
309 |
caaaatcaaaagcatcaccatagtgtagttcatgcggaagtatgagatgttgacacgaacacgtgaaattgcttccggtacaccagtggggatgccgagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396090 |
caaaatcaaaagcatcaccatagtgtagttcatgcggaagtatgagatgttgacacgaacacgtgaaattgcttccggtacaccagtggggatgccgagt |
5396189 |
T |
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| Q |
409 |
gaccggatatcaaacatggttttccacggtcgacgagttcttaagccggccttgatccgttgtttgccacgtgttatgtattcaagttttggtggtgttg |
508 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396190 |
gaccggatatcgaacatggttttccacggtcgacgagttcctaagccggccttgatccgttgtttgccacgtgttatgtattcaagttttggtggtgttg |
5396289 |
T |
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| Q |
509 |
gtgaggttgggattgtgccgtaggttgatgtcatggtggtggaaacaaccaatgcaaaaattgtaatgtaattgcaatttggaacgaacaatataatgaa |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396290 |
gtgaggttgggattgtgccgtaggttgatgtcatggtggtggaaacaaccaatgcaaaaattgtaatgtaattgcaatttggaacgaacaatataatgaa |
5396389 |
T |
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| Q |
609 |
atggttac |
616 |
Q |
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|||||||| |
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| T |
5396390 |
atggttac |
5396397 |
T |
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