View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_high_8 (Length: 387)
Name: NF16514_high_8
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 9585135 - 9584781
Alignment:
| Q |
20 |
gttccttacatgcatgatttggctcaattataccatgctccttacttgcatgatttggatctcaatcccaatgacgatgctttatatatcacggaggatg |
119 |
Q |
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| T |
9585135 |
gttccttacatgcatgatttggctcaattataccatgctccttacttgcatgatttggatctcaatcccaatgacgatgctttatatatcacggaggatg |
9585036 |
T |
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| Q |
120 |
accaagtgctaatgtattatagaaatttggtgcaattgatgtttactgtctatgattccaaaagtggtacttttaatatgtcagtgcctcaagacattaa |
219 |
Q |
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| T |
9585035 |
accaagtgctaatgtattatagaaatttggtgcaattgatgtttactgtctatgattccaaaagtggtacttttaatatgtcagtgcctcaagacattaa |
9584936 |
T |
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| Q |
220 |
tggttattttaatccagaagtctatgtcgagagtttgatatcaccttgtccttgatgttgttaattagatgttatggtctgtcacttatctggagattcg |
319 |
Q |
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| T |
9584935 |
tggttattttaatccagaagtctatgtcgagagtttgatatcaccttgtccttgatgttgttaattagatgttatggtctgtcacttatctggagattcg |
9584836 |
T |
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| Q |
320 |
attacaacttatgttaacttagcttttattactgttatttagtttatgcttgttc |
374 |
Q |
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| T |
9584835 |
attacaacttatgttaacttagcttttattactgttatttagtttatgcttgttc |
9584781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 79 - 374
Target Start/End: Complemental strand, 763538 - 763248
Alignment:
| Q |
79 |
tctcaatcccaatgacgatgctttatatatcacggaggatgaccaagtgctaatgtattatagaaatttggtgcaattgatgtttactgtctatgattcc |
178 |
Q |
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| T |
763538 |
tctctatcccaatgacggtcctttatatatcacggaggatgaccaagtgctaatttattataaacattgggaggaattgatggttactgtctatgactcc |
763439 |
T |
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| Q |
179 |
aaaagtggtacttttaatatgtcagtgcctcaagacattaatggttattttaatccagaagtctatgtcgagagtttgatatcaccttgtccttgatgtt |
278 |
Q |
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| T |
763438 |
aaaagtggtacttttaatatgtcagcgcgtcaaaaaattaatggtttttacagtccagcagtctatgttgagagtttaatatcaccttgttcttaatgtt |
763339 |
T |
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| Q |
279 |
gttaattagatgttatggtctgtcacttatctggagattcgattacaacttatgttaacttagcttttattactgttatttagtttatgcttgttc |
374 |
Q |
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| T |
763338 |
attagttagatgttatggtcagtcacttatcgcgagattcaactagaacttatg-----ttaccttttattaatgttatttatttcatgcttgttc |
763248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 13526699 - 13526737
Alignment:
| Q |
99 |
ctttatatatcacggaggatgaccaagtgctaatgtatt |
137 |
Q |
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| T |
13526699 |
ctttatatattacggaagatgaccaagtgctaatgtatt |
13526737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 9587063 - 9587031
Alignment:
| Q |
166 |
tgtctatgattccaaaagtggtacttttaatat |
198 |
Q |
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| T |
9587063 |
tgtctatgattccaaaaatggtacttttaatat |
9587031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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