View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_10 (Length: 388)
Name: NF16514_low_10
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 47000989 - 47000630
Alignment:
| Q |
17 |
aattacttgtatcaatatgtggctagattctaaatgaaattctactgtttcttctaccagtaatcccgacaggaacaagaaccgtccttaaaatgatgaa |
116 |
Q |
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| T |
47000989 |
aattacttgtatcaatatgtggctagattctaaatgaaattctactgtttcttctaccagtaatcccgacaggaacaagaaccgtccttaaaatgatgaa |
47000890 |
T |
|
| Q |
117 |
aacgtgtggcatctcttactataatttctcttccgacgagcatagagatatattttatagcagaatggcagtcattacaaactctaaggttcttcatgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47000889 |
aacgtgtggcatctcttactataatttctcttccgacgagcatagagatatattttatggcagaatggcagtcattacaaactctaaggttcttcatgat |
47000790 |
T |
|
| Q |
217 |
cctcagtgtagtataccctggactatttattaatgcaaatgcaatagctagtttttcactatgatgactgaggatctgttccttcacttcttggtctagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47000789 |
cctcagtgtagtataccctggactatttattaatgcaaatgcaatagctagtttttcactatgatgactgaggatctgttccttcacttcttggtctagg |
47000690 |
T |
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| Q |
317 |
tcatgtaatacagaatcagtgtccggattaaagccgattttctttatctccttccatatt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47000689 |
tcatgtaatacagaatcagtgtccggattaaagccgattttctttatctccttccatatt |
47000630 |
T |
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