View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_12 (Length: 376)
Name: NF16514_low_12
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 33656965 - 33656627
Alignment:
| Q |
16 |
attctagagtataatttcaagtggcaaaaccaacctaaattagttaatgacctaaaggtaaagccattgaaacaattattgttttaagactnnnnnnnta |
115 |
Q |
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| T |
33656965 |
attcaagagtataatttcaagtggcaaaaccaacctaaattagttaatgacctaaaggtaaagccattgaaacaattattgttttaagactcaaaaaata |
33656866 |
T |
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| Q |
116 |
ttagaaaattatctgataaagaaaatctcttgtactctagtaattttagtaaagggttattacgatcttcaaaataaccgtattctaaaataaataaaaa |
215 |
Q |
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| T |
33656865 |
ttagaaaattatctgataaagaaaatctcttgtactctagtaattttagtaaagggttattacgatcttcaaaataaccgtattctaaaataaa---aaa |
33656769 |
T |
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| Q |
216 |
atcgtcttagaccttaatacgtggtgagtcggttatttcagcaatgaagtgtgcaattctcttgcaatcatattggtgtgtagcatttggctttgaatta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33656768 |
atcgtcttagaccttaatacgtggtgagtcggttatttgagcaatgaagtgtgcaattctcttgcaatcatattggtgtgtagcatttggctttgaatta |
33656669 |
T |
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| Q |
316 |
cattttaaggtggca-atatgcgaaattaatatccacatgtg |
356 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33656668 |
cattttaaggtggcatatatgcgaaattaatatccacatgtg |
33656627 |
T |
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