View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_16 (Length: 303)
Name: NF16514_low_16
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 54294112 - 54293840
Alignment:
| Q |
15 |
ttgagaggatagttttgacttttgattgatgaactggaaggaatgacacaatcttgttcattgagaggatagtttgagtgatgaattgggatcaaagatt |
114 |
Q |
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| T |
54294112 |
ttgagaggatagttttgacttttgattgatgaactggaaggaatgacacaatcttgttcattgagaggatagtttgagtgatgaattgggatcaaagatt |
54294013 |
T |
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| Q |
115 |
gccctttagtttgactagattctgattcataggagcaatatgttctgatctttgatttaattttcagttttaatatgcttaaggtataagttgttagatt |
214 |
Q |
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| T |
54294012 |
tccctttagtttgactagattctgattcataggagcaatatgttctgatctttgatttaattttcagttttaatatgcttaaggtataagttgttagatt |
54293913 |
T |
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| Q |
215 |
tgaaatgtgtgtttagattctctgcagttactatagaattcaaactgtttttcgcttaaatccaatggctctg |
287 |
Q |
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| T |
54293912 |
tgaaatgtgtgtttagattctctgcagttactatagaattcaaactgtttttcacttaaatccaatggctctg |
54293840 |
T |
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