View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16514_low_20 (Length: 266)

Name: NF16514_low_20
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16514_low_20
NF16514_low_20
[»] chr6 (4 HSPs)
chr6 (1-256)||(2602227-2602482)
chr6 (187-258)||(19294667-19294738)
chr6 (121-224)||(17261858-17261962)
chr6 (130-225)||(33234694-33234790)
[»] chr8 (3 HSPs)
chr8 (130-258)||(2874854-2874983)
chr8 (12-258)||(13097587-13097841)
chr8 (130-198)||(2797251-2797320)
[»] chr1 (2 HSPs)
chr1 (12-225)||(16426581-16426802)
chr1 (182-258)||(48632329-48632405)
[»] chr3 (2 HSPs)
chr3 (182-258)||(25092132-25092208)
chr3 (1-63)||(42718559-42718622)
[»] chr7 (4 HSPs)
chr7 (187-258)||(44572283-44572354)
chr7 (12-73)||(11820479-11820542)
chr7 (141-235)||(11809061-11809156)
chr7 (1-62)||(11810876-11810939)
[»] chr2 (3 HSPs)
chr2 (187-258)||(26576401-26576472)
chr2 (215-258)||(17651633-17651676)
chr2 (118-197)||(41849267-41849347)
[»] chr4 (2 HSPs)
chr4 (187-252)||(54305958-54306023)
chr4 (13-58)||(32593973-32594018)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2602227 - 2602482
Alignment:
Q  1 tataaaccctagttgatcaacatttctcacagatttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602227 tataaaccctagttgatcaacatttctcacagatttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgccc 2602326  T
Q  101 gacacgcctatatgtattataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggcacttgtccgacacgtgtcgta 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602327 gacacgcctatatgtgttataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggcacttgtccgacacgtgtcgta 2602426  T
Q  201 tgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602427 tgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtg 2602482  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 19294667 - 19294738
Alignment:
Q  187 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
    |||||||||||||| | |||||| || |||||||||||| ||||||||| |||||||| ||||||| |||||    
T  19294667 cgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgct 19294738  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 17261858 - 17261962
Alignment:
Q  121 aggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggca-cttgtccgacacgtgtcgtatgtgtgtcatagcagtgtc 219  Q
    |||||||  ||||||||| ||| |||||| |||||||| |||||||| || |||| || | |||||| ||||||||||||| | ||||| ||| |||||     
T  17261858 aggtgtcggacaccggtctaagaagtgtcgaaataaagaagaaaacaccttatttaggaatcttgtcggacacgtgtcgtacgagtgtcgtaggagtgtt 17261957  T
Q  220 ggaca 224  Q
    |||||    
T  17261958 ggaca 17261962  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 33234790 - 33234694
Alignment:
Q  130 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacac 225  Q
    |||||||||||| |||| || || |||||  |||||||||| |||| || ||||||||| |||||||||||| | ||||| |||  ||||| |||||    
T  33234790 acaccggtccaaagagtatcgaagtaaagatgaaaacaacttatttatgacacttgtccaacacgtgtcgtacgagtgtcttagatgtgtccgacac 33234694  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 258
Target Start/End: Complemental strand, 2874983 - 2874854
Alignment:
Q  130 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgc 228  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| ||||||||| ||||| |||||||||  |||||||| || ||    
T  2874983 acaccagtccaaggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgc 2874884  T
Q  229 gacacgcttaatcctaaaggtgtctgtgct 258  Q
    |||| || |||||||| ||||||| |||||    
T  2874883 gacatgcgtaatcctagaggtgtccgtgct 2874854  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 13097587 - 13097841
Alignment:
Q  12 gttgatcaacatttctcacagat--ttaactcttgaatctgttgtgtgtggaagtaaaga-aaaataatcctgatatttatttgagttgcccgacacgcc 108  Q
    |||||||||||||||||||| ||  |||||||||||||||  |||||||||||| | ||| |||| ||  |  | |||| ||||| ||| |||||||||     
T  13097587 gttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagagacaaaaaaaatcaaacatttgtttgaattgtccgacacgct 13097686  T
Q  109 t---atatgtattata--ggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggc-acttgtccgacacgtgtcgtatg 202  Q
    |   ||| || |||||  ||||||  ||||||||| ||||||||||| | ||||| |||||| | || |||| ||  |||| |||||| ||||||||| |    
T  13097687 tcatataagtgttatataggtgtcgcacaccggtctaaggagtgtcacagtaaagaagaaaatatcttatttaggatacttatccgactcgtgtcgtacg 13097786  T
Q  203 tgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
     ||||||||  |||||||||||| ||||||||| |||| ||| | |||||||||||    
T  13097787 agtgtcatatgagtgtcggacaccgcgacacgcctaattctaga-gtgtctgtgct 13097841  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 2797251 - 2797320
Alignment:
Q  130 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcg 198  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| |||||||||||    
T  2797251 acaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgtcg 2797320  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 16426581 - 16426802
Alignment:
Q  12 gttgatcaacatttctcacaga--tttaa-ctcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcc 108  Q
    |||||||||||||||||||| |  ||||| | |||||||||  | ||||| |||| ||||||||| |||||  |||||| ||||||||| || |||||||    
T  16426581 gttgatcaacatttctcacacatctttaaccccttgaatctactatgtgtagaagcaaagaaaaaaaatccgtatatttgtttgagttgtccaacacgcc 16426680  T
Q  109 ---tatatgtattat---aggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtat 201  Q
       |||| || ||||   ||||||| |||| |||||||| |||||||||| ||||| | |||| |||| |||| || ||||||| |||||| |||||||     
T  16426681 tcatataagtgttatataaggtgtcgaaca-cggtccaaagagtgtcaaagtaaagaaaaaaaaaacttatttatgacacttgttcgacacatgtcgtac 16426779  T
Q  202 gtgtgtcatagcagtgtcggacac 225  Q
    | || |||||| ||||||||||||    
T  16426780 gagt-tcataggagtgtcggacac 16426802  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 48632405 - 48632329
Alignment:
Q  182 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
    ||||||||| |||||| || | ||||||| | |||||||||||| ||||||||| || ||||| ||||||| |||||    
T  48632405 ttgtccgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgct 48632329  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 25092208 - 25092132
Alignment:
Q  182 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
    ||||||||||||||| ||| | ||||||||| |||||| ||||||||||||| | || ||||| ||||||| |||||    
T  25092208 ttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacacacctagtcctagaggtgtccgtgct 25092132  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42718622 - 42718559
Alignment:
Q  1 tataaaccctagttgatcaacatttctcaca-gatttaactcttgaatctgttgtgtgtggaag 63  Q
    ||||| |||| |||| ||||||||||||||| | |||||||||| ||||| |||||||||||||    
T  42718622 tataatccctcgttgttcaacatttctcacacgttttaactcttaaatctattgtgtgtggaag 42718559  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 44572354 - 44572283
Alignment:
Q  187 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||| || || || ||||||| |||||    
T  44572354 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgct 44572283  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 11820542 - 11820479
Alignment:
Q  12 gttgatcaacatttctcacagat--ttaactcttgaatctgttgtgtgtggaagtaaagaaaaa 73  Q
    |||||||||||||||||||| ||  |||||||||||||||  |||||||||||| | |||||||    
T  11820542 gttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagagaaaaa 11820479  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 11809156 - 11809061
Alignment:
Q  141 aggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgc 235  Q
    |||| ||||||| ||||| |||||| ||||  ||| || |||||||||||||| |||||||||||||| ||   |||||| ||||| |||||||||    
T  11809156 aggaatgtcaaagtaaagaagaaaataacttgtttatgacacttgtccgacacatgtcgtatgtgtgttattatagtgtcagacaccgcgacacgc 11809061  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11810939 - 11810876
Alignment:
Q  1 tataaaccctagttgatcaacatttctcaca--gatttaactcttgaatctgttgtgtgtggaa 62  Q
    |||||||||| | ||||||||||||||||||  | ||||||||||||||||  | |||||||||    
T  11810939 tataaaccctcgctgatcaacatttctcacaaggctttaactcttgaatctactttgtgtggaa 11810876  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 26576401 - 26576472
Alignment:
Q  187 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||  || ||||| ||||||| |||||    
T  26576401 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgacacgtctagtcctagaggtgtccgtgct 26576472  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 17651633 - 17651676
Alignment:
Q  215 gtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 258  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||    
T  17651633 gtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgct 17651676  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 41849267 - 41849347
Alignment:
Q  118 tataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttgg-cacttgtccgacacgtgtc 197  Q
    ||||||||||  ||||| |||||||||||||| |||||||  |||||| |||| |||| || ||||||| ||| |||||||    
T  41849267 tataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttatttaggacacttgttcgatacgtgtc 41849347  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 54305958 - 54306023
Alignment:
Q  187 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 252  Q
    |||||||||||||| | ||||||||| |||||||||||| | ||||||| || ||||| |||||||    
T  54305958 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgacacgcctagtcctagaggtgtc 54306023  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 32593973 - 32594018
Alignment:
Q  13 ttgatcaacatttctcacagatttaactcttgaatctgttgtgtgt 58  Q
    |||||||||||||||||||  ||||||||||||||||  |||||||    
T  32593973 ttgatcaacatttctcacatctttaactcttgaatctactgtgtgt 32594018  T

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