View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16514_low_23 (Length: 252)

Name: NF16514_low_23
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16514_low_23
NF16514_low_23
[»] chr1 (3 HSPs)
chr1 (1-252)||(36617757-36618008)
chr1 (59-122)||(26627846-26627909)
chr1 (91-129)||(25590005-25590043)
[»] chr4 (6 HSPs)
chr4 (53-129)||(53977798-53977874)
chr4 (51-125)||(20290441-20290515)
chr4 (84-129)||(6680880-6680925)
chr4 (91-127)||(25171117-25171153)
chr4 (60-127)||(50912810-50912877)
chr4 (39-127)||(31355606-31355694)
[»] chr7 (2 HSPs)
chr7 (59-215)||(8266731-8266889)
chr7 (60-122)||(29170077-29170139)
[»] chr5 (3 HSPs)
chr5 (51-122)||(16598021-16598092)
chr5 (59-129)||(22663981-22664051)
chr5 (39-127)||(10275464-10275552)
[»] chr2 (2 HSPs)
chr2 (39-129)||(17256207-17256297)
chr2 (39-127)||(13270170-13270258)
[»] scaffold0336 (1 HSPs)
scaffold0336 (60-127)||(360-427)
[»] chr8 (1 HSPs)
chr8 (60-127)||(37185973-37186040)
[»] chr6 (2 HSPs)
chr6 (59-118)||(21462860-21462919)
chr6 (81-129)||(23254521-23254569)
[»] chr3 (1 HSPs)
chr3 (59-122)||(32371567-32371630)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36617757 - 36618008
Alignment:
Q  1 ggtgaagcaattgctgagcaataagttgttgaaaggtaatgaggaccttgtctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36617757 ggtgaagcaattgctgagcaataagttgttgaaaggtaatgaggaccttgtctctaagatttgatttcatagttgttgtcattcaagaatcaaaggatgt 36617856  T
Q  101 gaaaactatgaagattgaagaattgcaaatttatttttaagcaaacgagcttatggtgattgaaagatgaacgaaaggccagttaaacaagccttcaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36617857 gaaaactatgaagattgaagaattgcaaatttatttttaagcaaatgagcttatggtgattgaaagatgaacgaaaggccagttaaacaagccttcaagc 36617956  T
Q  201 tcaaactatcaagaaggataataatgacaagaagaagggcaaatataacttc 252  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  36617957 tcaaactatcgagaaggataataatgacaagaagaatggcaaatataacttc 36618008  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 26627909 - 26627846
Alignment:
Q  59 atttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaa 122  Q
    |||||||||||||||||| | ||| |||||| | || |||||||||||  ||||||||||||||    
T  26627909 atttgatttcatagttgtggccatacaagaagctaaggatgtgaaaacattgaagattgaagaa 26627846  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 25590043 - 25590005
Alignment:
Q  91 caaacgatgtgaaaactatgaagattgaagaattgcaaa 129  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  25590043 caaaggatgttaaaactatgaagattgaagaattgcaaa 25590005  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 53977798 - 53977874
Alignment:
Q  53 tctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgcaaa 129  Q
    ||||| ||||||||| ||||| ||||  |||||||||||||| |||||||||| | |||||||||||||||||||||    
T  53977798 tctaatatttgattttatagtggttgcaattcaagaatcaaaggatgtgaaaaatttgaagattgaagaattgcaaa 53977874  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 20290441 - 20290515
Alignment:
Q  51 tctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattg 125  Q
    |||| |||||||||||| ||||| ||||  ||||| |||||||| |||||||||||| |||||||||||||||||    
T  20290441 tctccaagatttgattttatagtggttgcaattcatgaatcaaaggatgtgaaaactttgaagattgaagaattg 20290515  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 6680925 - 6680880
Alignment:
Q  84 caagaatcaaacgatgtgaaaactatgaagattgaagaattgcaaa 129  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||    
T  6680925 caagaagcaaaggatgtgaagactatgaagattgaagaattgcaaa 6680880  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 25171117 - 25171153
Alignment:
Q  91 caaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    |||| ||||||||||||||||||||||||||||||||    
T  25171117 caaaggatgtgaaaactatgaagattgaagaattgca 25171153  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 50912810 - 50912877
Alignment:
Q  60 tttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    |||||||||||||| || |  || |||||| |||| |||||||| |||||||||||||||||| ||||    
T  50912810 tttgatttcatagtagtagcaatccaagaagcaaaggatgtgaagactatgaagattgaagaactgca 50912877  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 31355606 - 31355694
Alignment:
Q  39 atgaggaccttgtctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    ||||||||| | |||  ||| ||||||||||| || || |  ||||| |||||||| |||||||| ||  |||||||||||||||||||    
T  31355606 atgaggaccctatcttcaaggtttgatttcattgtagtagcaattcaggaatcaaaggatgtgaagacattgaagattgaagaattgca 31355694  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 8266731 - 8266889
Alignment:
Q  59 atttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgcaaatttatttttaagcaaacgagcttatggtg 158  Q
    ||||||||||||||| ||  | |||||||||  ||| ||||||||||||||||||||| |||||||||| | ||   || ||||| | |||||  |||||    
T  8266731 atttgatttcatagtagtattaattcaagaagtaaaggatgtgaaaactatgaagattaaagaattgcagacttcccttaaagcacatgagctactggtg 8266830  T
Q  159 attgaaagatgaac-gaaaggccagttaaacaag-ccttcaagctcaaactatcaagaa 215  Q
    ||||| ||| |  | |||||  ||||| |||||| ||||||||||||||| ||||||||    
T  8266831 attgatagaggttcagaaagatcagttcaacaagcccttcaagctcaaacaatcaagaa 8266889  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 29170139 - 29170077
Alignment:
Q  60 tttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaa 122  Q
    |||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||| ||||||    
T  29170139 tttgatttcatagttgttgtaattcaagaatcaaaggatgtaacaacaatgaagatagaagaa 29170077  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 16598092 - 16598021
Alignment:
Q  51 tctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaa 122  Q
    |||||||| |||||||||||||| || | ||| |||||||| || |||||||||||| |||||||| |||||    
T  16598092 tctctaaggtttgatttcatagtagtggacatacaagaatcgaaagatgtgaaaactttgaagattcaagaa 16598021  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 22664051 - 22663981
Alignment:
Q  59 atttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgcaaa 129  Q
    |||||||||||| || || |  ||||||||| | || ||||||||||||||||| ||||| ||||||||||    
T  22664051 atttgatttcatggtagtggcaattcaagaagctaaggatgtgaaaactatgaaaattgaggaattgcaaa 22663981  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 10275464 - 10275552
Alignment:
Q  39 atgaggaccttgtctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    ||||||||| | |||  ||| ||||||||||| || || || ||||| |||||||| |||||||| ||  |||||||||| ||||||||    
T  10275464 atgaggaccctatcttcaaggtttgatttcattgtggtagtaattcatgaatcaaaggatgtgaagacattgaagattgaggaattgca 10275552  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 17256207 - 17256297
Alignment:
Q  39 atgaggaccttgtctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgcaaa 129  Q
    |||||||| ||||||  ||| |||||||| || ||||| |  ||||||||||| || |||||||||||  ||||||||| |||||||||||    
T  17256207 atgaggacattgtcttcaaggtttgattttattgttgtagcaattcaagaatctaaggatgtgaaaaccttgaagattgtagaattgcaaa 17256297  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 13270258 - 13270170
Alignment:
Q  39 atgaggaccttgtctctaagatttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    ||||||||| | |||  ||| ||||||||||| || || |  ||||| |||||||| |||||||| ||  |||||||||||||||||||    
T  13270258 atgaggaccctatcttcaaggtttgatttcattgtggtagcaattcaggaatcaaaagatgtgaagacattgaagattgaagaattgca 13270170  T

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Target: scaffold0336 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 360 - 427
Alignment:
Q  60 tttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    |||||||||||||| || |  || |||||| |||| |||||||| |||||||||||||||||| ||||    
T  360 tttgatttcatagtagtagcaatccaagaagcaaaggatgtgaagactatgaagattgaagaactgca 427  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 37186040 - 37185973
Alignment:
Q  60 tttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaattgca 127  Q
    ||||| |||||||| || || || |||||| |||| |||||||| ||||||||| |||||||||||||    
T  37186040 tttgacttcatagtggtagtaatccaagaagcaaaggatgtgaagactatgaaggttgaagaattgca 37185973  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 21462860 - 21462919
Alignment:
Q  59 atttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattga 118  Q
    ||||||||||||||| ||||| || |||||||| || ||||| |||||| ||||||||||    
T  21462860 atttgatttcatagtagttgttatacaagaatccaaggatgtcaaaactctgaagattga 21462919  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 23254521 - 23254569
Alignment:
Q  81 attcaagaatcaaacgatgtgaaaactatgaagattgaagaattgcaaa 129  Q
    ||||| |||||||| |||||||||||  || ||||||||||||||||||    
T  23254521 attcaggaatcaaatgatgtgaaaacattgtagattgaagaattgcaaa 23254569  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 32371630 - 32371567
Alignment:
Q  59 atttgatttcatagttgttgtcattcaagaatcaaacgatgtgaaaactatgaagattgaagaa 122  Q
    ||||||||||||||| ||||  || |||||||| || ||||| |||||| ||||||||||||||    
T  32371630 atttgatttcatagtagttgctatacaagaatccaaagatgtaaaaactctgaagattgaagaa 32371567  T

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