View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_3 (Length: 692)
Name: NF16514_low_3
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Complemental strand, 48307895 - 48307232
Alignment:
| Q |
8 |
atataaaaaataaaagtcaatcacatttatggtatggtaggatatactgtttgcaagttgatagtagagttgcaatgctactccattctcataggctata |
107 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48307895 |
atatcaaaaataaaagtcaatcacatttatggta-----ggatataatgtttgcaagttgatagtagagttgcaatgctactccattctcataggctata |
48307801 |
T |
|
| Q |
108 |
tcatgatgcagagatacaacaggttgattttgctcaaatttcttatgactttctgatttaattcaaccaaaagttcctttttacaataacatttgtgaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48307800 |
tcatgatgcagagatacaacaggttgattttgctcaaatttcttatgactttctgatttaattcaaccaaaagttcctttttacgataacatttgtgaga |
48307701 |
T |
|
| Q |
208 |
ggatctctgaacatatggcaattttctattaagtatatgtccccttctattttactttgttgtaacttgtaactttaacatcaattataattgttaaact |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48307700 |
ggatctctgaacatatggcaattttctattaagtatatgtccccttctattttactttgttgtaacttgtaactttaacatcaattataattgttaaact |
48307601 |
T |
|
| Q |
308 |
gataaagggaatgttcaaatggtaatgttttgtgtagccatgaaatagttacgtatatagagattccagcaggattgttgcgagtgtggatgacaatgca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48307600 |
gataaagggaatgttcaaatggtaatgttttgtgtagccatgaaatagttacgtatatagagattccagcaggattgttgcgagtgtggacaacaatgca |
48307501 |
T |
|
| Q |
408 |
cttcttattcatcaagtttatgcaaaggttgttatactgaatgatctctttgcagattttgagcaccaacttctgatacgtgaatgttcctagtgcacga |
507 |
Q |
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| T |
48307500 |
cttcttattcatcaagttgatgcaaaggttgttatactgaatgatctctttgcagattttgagcaccaacttctgatacgtgaatgttcctagtgcacga |
48307401 |
T |
|
| Q |
508 |
ccttgtctacaatgtgaccaataagctattgtgtaaattcaattcagacttagaaataagttatttatcatttcggtatcaacaccagattttgtgtgct |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48307400 |
ccttgtctacaatgtgaccaataagctattgtgtaaattcaattcagacttagaaataagttatttatcatttcggtatcaacaccagattttgtgtgct |
48307301 |
T |
|
| Q |
608 |
ttcttgaaatgaataacctttacgttgtaggtaacttctgccagtaactcagatgtcccatcagtttta |
676 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48307300 |
ttcttgaaatgaataacctttacgttgtaggtaacttctgccaataactcagatgtcccatcagtttta |
48307232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 236 - 676
Target Start/End: Complemental strand, 48296357 - 48295917
Alignment:
| Q |
236 |
ttaagtatatgtccccttctattttactttgttgtaacttgtaactttaacatcaattataattgttaaactgataaagggaatgttcaaatggtaatgt |
335 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
48296357 |
ttaagtatatgtccccttctattttactttgttttaacttgtaactttaacatcaattataattgttaaaattataaagggaatgttcaaatggtaatgt |
48296258 |
T |
|
| Q |
336 |
tttgtgtagccatgaaatagttacgtatatagagattccagcaggattgttgcgagtgtggatgacaatgcacttcttattcatcaagtttatgcaaagg |
435 |
Q |
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| T |
48296257 |
tttgtgtagccatgaaatagttacgtatatagagattccagcaggattgttgcgagtgtggacgacaatgcacttcttattcatcaagttgatgcaaagg |
48296158 |
T |
|
| Q |
436 |
ttgttatactgaatgatctctttgcagattttgagcaccaacttctgatacgtgaatgttcctagtgcacgaccttgtctacaatgtgaccaataagcta |
535 |
Q |
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| T |
48296157 |
ttgttatactgaatgatctctttgcagattttgagcaccaacttctgatacgtgaatgttcctagtgcacgaccttgtctacaatgtgaccaataagcta |
48296058 |
T |
|
| Q |
536 |
ttgtgtaaattcaattcagacttagaaataagttatttatcatttcggtatcaacaccagattttgtgtgctttcttgaaatgaataacctttacgttgt |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48296057 |
ttgtgtaaattcaattcagacttagaaataagttatttatcatttcggtatcaacaccagattttgtgtgctttcttgaaatgaataacctttacgttgt |
48295958 |
T |
|
| Q |
636 |
aggtaacttctgccagtaactcagatgtcccatcagtttta |
676 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48295957 |
aggtaacttctgccaataactcagatgtcccatcagtttta |
48295917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 37295878 - 37295687
Alignment:
| Q |
40 |
tatggtaggatatactgtttgcaagttgatagtagagttgcaatgctactccattctcataggctatatcatgatgcagagatacaacaggt-tgatttt |
138 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| | |||| |
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| T |
37295878 |
tatggtaggatatactgcttgcaagtcgatag---agttgcaatgctactccattcctataggctatatcgtgatgcagtgatacaacaggtggggtttt |
37295782 |
T |
|
| Q |
139 |
gctcaaatttctta-tgactttctgatttaattcaaccaaaagttcctttttacaataacatttgtgagaggatctctgaacatatggcaattttctatt |
237 |
Q |
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| || ||||||||| |||||| | ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
37295781 |
gttctaatttcttattgactt-----tataattcagccaaaagttcttttttacaataacatttgtgagagcttctctgaacatatgctaattttttatt |
37295687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 465
Target Start/End: Complemental strand, 37295123 - 37295028
Alignment:
| Q |
370 |
attccagcaggattgttgcgagtgtggatgacaatgcacttcttattcatcaagtttatgcaaaggttgttatactgaatgatctctttgcagatt |
465 |
Q |
| |
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||||||||||||||| || |||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
37295123 |
attccagcaggattgctgggagtgtggtcgacaatgtacttcttattcatcaagttgatgcaaaggttgtcatactttatgatctctttgcagatt |
37295028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 519 - 670
Target Start/End: Complemental strand, 37294850 - 37294699
Alignment:
| Q |
519 |
atgtgaccaataagctattgtgtaaattcaattcagacttagaaataagttattta-tcatttcggtatcaacaccagattttgtgtgctttcttgaaat |
617 |
Q |
| |
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||||| ||||||||||||| || |||||||||| |||||||||| ||||| |||| |||||| |||||||| || |||| ||||||| | |||||| |
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| T |
37294850 |
atgtggccaataagctattatggaaattcaatttagacttagaagtaagtattttattcattttggtatcaatgtcaaatttgttgtgcttccgtgaaat |
37294751 |
T |
|
| Q |
618 |
gaataacctttacgttgtaggtaacttctgccagtaactcagatgtcccatca |
670 |
Q |
| |
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|||||||| ||| ||||||| || ||| ||||| ||||||||||| |||||| |
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| T |
37294750 |
gaataacc-ttagtttgtaggcaatttccgccagcaactcagatgtaccatca |
37294699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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