View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_5 (Length: 575)
Name: NF16514_low_5
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_5 |
 | |
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| [»] scaffold0164 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 86 - 443
Target Start/End: Original strand, 40883426 - 40883785
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaacacatacatgcactctctttgtttttattctttgagtttgagtattgtctttgaattttttgagaaa |
185 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40883426 |
acaaatgatgatcataaagagtggaattagaaacacgtacatgcactctctttatttttattctttgagtttgagtattgtctttgaattttttgagaaa |
40883525 |
T |
|
| Q |
186 |
tcaagagccacaggaacattagtgaaccgtcattgctcaacctgaataacatcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtat |
285 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40883526 |
tcaagagccacagaaacatcagtgaaccgtcattgctcaacctgaataaaatcacaacaattacaaataaattcaacactaaagaagaagtagaaagtat |
40883625 |
T |
|
| Q |
286 |
atttgattattgaaaaatatttatatagataattaggacaacaaataacacagaag--nnnnnnnnggaagaaataaatcgaagaaagtatccatagtat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
40883626 |
atttgattattgaaaaatatttatatagataattaggacaacaaataacacagaagaagaaaaaaaggaagaaataaaccgaagaaagtatccatagtgt |
40883725 |
T |
|
| Q |
384 |
cgtcacgacagcattcagctcccactatcctaccatgattgcctccggaggccaacaatg |
443 |
Q |
| |
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||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
40883726 |
cgtcacggcagcattcagttcccactatcctaccacgattgcctccggaggccaacaatg |
40883785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 86 - 443
Target Start/End: Complemental strand, 8891095 - 8890736
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaacacatacatgcactctctttgtttttattctttgagtttgagtattgtctttgaattttttgagaaa |
185 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8891095 |
acaaatgatgatcataaagagtggaattagaaacacgtacgtgcactctctttgtttttattctttgagtttgagtattgtctttgaattttttgagaaa |
8890996 |
T |
|
| Q |
186 |
tcaagagccacaggaacattagtgaaccgtcattgctcaacctgaataacatcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtat |
285 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8890995 |
tcaagagccacaggaacattagtgaatcgtcattactcatcctgaataacatcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtat |
8890896 |
T |
|
| Q |
286 |
atttgattattgaaaaatatttatatagataattaggacaacaaataacacagaag--nnnnnnnnggaagaaataaatcgaagaaagtatccatagtat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
8890895 |
atttgattattgaaaaatatttatatagataattaggacaacaaataacacaaaagaagaaaaaaaggaagaaataaaccgaagaaagtatccatagtgc |
8890796 |
T |
|
| Q |
384 |
cgtcacgacagcattcagctcccactatcctaccatgattgcctccggaggccaacaatg |
443 |
Q |
| |
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||||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
8890795 |
cgtcacggcagcattcagttcccactatcctaccacgattgccttcggaggccaacaatg |
8890736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 473 - 564
Target Start/End: Complemental strand, 8890129 - 8890038
Alignment:
| Q |
473 |
atattaacccaaatcaaccatggacgtcattgccttttcagttttgacttcataaggaatactgcaccatccatttattcattgtccctttg |
564 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8890129 |
atattaacccaaatcaaccatgaacgtcattgccttttcagttttgacttcataaggaatactgcaccatccatttattcatcgtccctttg |
8890038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 18700071 - 18700182
Alignment:
| Q |
166 |
tctttgaattttttgagaaatcaagagccacaggaacattagtgaaccgtc----attgctcaacctgaataacatcacaacaattacaaacaaattcaa |
261 |
Q |
| |
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||||||||||| ||||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18700071 |
tctttgaatttattgagaaatt--gagtcatgggaacattagtgaaccgtctttgcttgctcaacctgaataacatcacaacaattacaaacaacatcaa |
18700168 |
T |
|
| Q |
262 |
cactaaagaagaag |
275 |
Q |
| |
|
|||||||||||||| |
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|
| T |
18700169 |
cactaaagaagaag |
18700182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 18700016 - 18700057
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaacacatacat |
127 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
18700016 |
acaaatgatgatcataaagagtggaattagaaacacgtacat |
18700057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 48118163 - 48117990
Alignment:
| Q |
164 |
tgtctttgaattttttgagaaatcaagagccacaggaacattagtgaaccgtcattgctc----aacctgaataacatcacaacaattacaaacaaattc |
259 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| ||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||| || |
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| T |
48118163 |
tgtcttagaatttattgagaaattgagagccacgggaacattagtgaaccgtctttgctcgctcaacctgagtaacatcgcaacaattacaaacaacatc |
48118064 |
T |
|
| Q |
260 |
aacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataacac |
336 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| || |||| |||| ||||||||||||||||| |||| |
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| T |
48118063 |
aacactaaagaaga---agaaagtatatttgattattgaagaacatttttatacctaattaggacaacaaatcacac |
48117990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 121 - 337
Target Start/End: Original strand, 33358389 - 33358610
Alignment:
| Q |
121 |
catacatgcactctctttgtttttattctttgagtttgagtattgtctttgaattttttgagaaatcaagagccacaggaa--------cattagtgaac |
212 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||| || |||| ||||||||||| |
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| T |
33358389 |
catacatgcactct---tgtttttattttttgagtttgagtcatgtctttgaatttattgagaaattgagagcaacgggaagtcgggaacattagtgaac |
33358485 |
T |
|
| Q |
213 |
cgtcattgctc----aacctgaataacatcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatattta |
308 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| |||| |
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|
| T |
33358486 |
cgtctttgctcgctcaacctgagtaacatcacaacaattacaaacaacatcatcactaaagaaga---agaaagtatatttgattatt-taaaacatttt |
33358581 |
T |
|
| Q |
309 |
tatagataattaggacaacaaataacaca |
337 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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| T |
33358582 |
tatacctaattaggacaacaaataacaca |
33358610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 33358308 - 33358349
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaacacatacat |
127 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
33358308 |
acaaatgatgatcgtaaagagtggaattagaaacacatacat |
33358349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 337
Target Start/End: Original strand, 10208637 - 10208879
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaacac-------atacatgcactctctttgtttttattctttgagtttgagtattgtctttgaattttt |
178 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||| | |
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| T |
10208637 |
acaaatgatgatcgtaatgagtggaattagaaacacgtacattatacatgcactct---tgttttcattttttgagtttgagtcatgtctttgaatttat |
10208733 |
T |
|
| Q |
179 |
tgagaaatcaagagccacaggaacattagtgaaccgtcattgctcaacctgaataacatcacaacaattacaaacaaattcaacactaaagaagaagtag |
278 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||| |||||| | ||| | | | |||||||| ||||||||||||| |||| |
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| T |
10208734 |
tgagaaattgagagccacgggaacattaatgaaccgtttttgctcgctc-----aacctaagta-----acaaacaacatcaacactaaagaggaag--- |
10208820 |
T |
|
| Q |
279 |
aaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataacaca |
337 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
10208821 |
aaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacaca |
10208879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 12318 - 12373
Alignment:
| Q |
220 |
gctcaacctgaataacatcacaacaattacaaacaaattcaacactaaagaagaag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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|
| T |
12318 |
gctcaacctgaataacatcacaacaattacgaaaaacatcaacactaaagaagaag |
12373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 12207 - 12248
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaacacatacat |
127 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
12207 |
acaaatgatgatcataaagagtggaattagaaacacttacat |
12248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 51035195 - 51035300
Alignment:
| Q |
86 |
acaaatgatgatcataaagagaggaattagaaaca-------catacatgcactctctttgtttttattctttgagtttgagtattgtctttgaattttt |
178 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||| | ||||||||||| | |
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| T |
51035195 |
acaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttttat--tttgagttttagtcctatctttgaatttat |
51035292 |
T |
|
| Q |
179 |
tgagaaat |
186 |
Q |
| |
|
|||||||| |
|
|
| T |
51035293 |
tgagaaat |
51035300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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