View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_6 (Length: 523)
Name: NF16514_low_6
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Complemental strand, 41989376 - 41988901
Alignment:
| Q |
13 |
cagaacatagacaacacgagagaagatatcaaatctagctagaagatagaaacaaatagttgaaatatctatcagacattgtaggtttttgttgtttgtt |
112 |
Q |
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| T |
41989376 |
cagaacatagacaacacgagagaagatatcaaatctagctagaagatagaaacaaatagttgaaatatctatcagacattgtaggtttttgttgtttgtt |
41989277 |
T |
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| Q |
113 |
gagggaaatgcaatacaaaacattaaatagagtatgtccataccacacaagtatatatcaatcatgagtcacaacatgtttactagtaaatccaaaaaat |
212 |
Q |
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| T |
41989276 |
gagggaaatgcaatacaaaacattaaatacagtatgtccataccacacaagtat----caatcatgagtcacaacatgtttactagtaaatccaaaaaat |
41989181 |
T |
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| Q |
213 |
taaaatatggcacttagcaaattaaattgaagactaacataaactatgagcttgtaagtttaatttaaaactgtagatcctttgaatttagaagtaatct |
312 |
Q |
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| T |
41989180 |
taaaatatggcacctagcaaattaaattgaagactaaaataaactatgagcttgtaagtttaatttaaaactgtagatcctttgaatttagaagtaatct |
41989081 |
T |
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| Q |
313 |
cttccataatcaattaatttcataccttatcaaaaacaaaatttagccgacacaaggaatacttagttacgttactgctaggtgtaggggaacttgttcc |
412 |
Q |
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| T |
41989080 |
cttccataatcaattaatttcataccttatcaaaaacaaaatttagccgacacaaggaatacttagttacgttactgctaggtgtaggggaacttgttcc |
41988981 |
T |
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| Q |
413 |
tattctaacctcttgttttcaactgagcaccagattcctgcataagggacaattatgtgaagtgacacatccaggaattg |
492 |
Q |
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| T |
41988980 |
tattctaacctcttgttttcaactgagcaccagattcctgcataagggacaattatgtgaagtgacacatccaggaattg |
41988901 |
T |
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