View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16514_low_8 (Length: 467)
Name: NF16514_low_8
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 450
Target Start/End: Complemental strand, 30772206 - 30771766
Alignment:
| Q |
10 |
attatacttggaaattccgactgcagggaatctggatccgatttataccggctgcgaagttctatttgactgctgaacattttctccaggaaattgttgg |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30772206 |
attatacctggaaattccgactgcagggaatctggatccgatttatactggctgcgaagttctatttgactgctgaacattttctccaggaaattgttgg |
30772107 |
T |
|
| Q |
110 |
gaagcatctgataatgctgcagcagcagctgcaggagtcatggattggtattgagtaaccaaaggagcactattttgctgttgagtatagtacacttgac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30772106 |
gaagcatctgataatgctgcagcagcagctgcaggagtcatggattggtattgagtaaccaaaggagcattattttgctgttgagtatagtacacttgac |
30772007 |
T |
|
| Q |
210 |
cttccacattaccactatattcataaccataattagtaccactaggaggagctacattaataggatgttgtggttgatgatgaaattgaggcataccaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30772006 |
cttccacattaccactatattcataaccataattagtaccactaggaggagctacattaataggatgttgtggttgatgatgaaattgaggcataccaac |
30771907 |
T |
|
| Q |
310 |
atattgttgttgaaattgatttgaaggtacttgaacaaatgttgaatttgatgccacattagggttaggtgctttattagggtaaattggtggagttcca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30771906 |
atattgttgttgaaattgatttgaaggtacttgaacaaatgttgaatttgatgccacattagggttaggtgctttattagggtaaattggtggagttcca |
30771807 |
T |
|
| Q |
410 |
ttttgtggtattattggtctactagaagctaccacattagg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30771806 |
ttttgtggtattattggtctactagaagctaccacattagg |
30771766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University